Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g447 ATGGGCCATGCTTCGCTCAACTCGCAAAGATTTAAGACTTTCGAACAGATCCAAGCCCAAATTTCCTCCCTCTCTCTGTCTTTCCCTCCCAAGTCCCACCTCAGCGATTCCCAGATGGATGAATTGCAAAGGAAAATGGAGCCAAACTTGGAGCAGACACTGCAAGAGGGAAAGCTCTATCGCCAGATCAATGCCTTAATCGTTGCCTATCTTCGCGACTACAATCTCACTCAGGCTGCAAGTGCGGTTGCTTCGGCGACAATGACGCCGTTGAATGTGGATACTCCTCCCTATAAGCTTATTGATTTGGTTGCTAAGGGCCTTGCAGTGGAGAAAGATGAGATGTTAAAAGGAGGGGTTCCTTCCGCTGCATTTCTTGATTCAGGTGCGGTCATGCCTGTGACATATGGTTCAATCCCAGCTCCTCGAACTGGCTATGATCGCTTTGCTGTGCATGATACAAAAGGCTCATCAAAGAGTTTTCCAAAGCATGAGACTCGGCATGTTTCAGAGCACAAGAACTTAGCCAGATGTGCAAGGTTTAGTCTTGATGGGAGGTTTGTGGCAACTGGGAGTGCAGACATGTCAATTAAGCTTTTTGAGATTTCAAAAATTAAGCAAATGATGTTGCCGGATGCCAATACAAGGGATGGTCCAGTGCGACCTGTCATACGAACATTTTATGACCATATACAGCCAATCAATGATCTGGATTTCCATCCTCAAAGTACTGTACTGATATCTGGGGCCAAGGATCACACCATAAAGTTCTTTGATTTTTCAAAAACAGTAGCAAAGAGGGCATTCAGGGTTATCCAGGATACTCACAATGTGCGGTCTGTATCTTTTCATCCTTCTGGGGATTTTCTTTTGGCAGGGACTGATCATCCAGTTGCACACTTGTATGATGTCAACACTTTTCAGTGTTACCTATCAGCAAATGTCCAAGATTTAGGTATTAGTGCATCCATAAATCAGGTGAGGTATTCATCTAATGGTGACATGTATGTGACAGCTTCCAAAGATGGTGCTATTCGGTTATGGGATGGAGTGACTGCAAATTGTGTGCGATCTATAGTTGGTGCACATGGAACAGCAGAGGCCACCAGTGCAAGTTTTACAAAGGATCAAAGGTTTGTTCTCTCTTGTGGAAAGGATTCTTCTGTGAAGCTTTGGGAAATCGGCTCTGGAAAGTTGGTCAAGCAATATCTTGGAGCTGCACATACACAGCTACGGTGTCAGGCTGTTTTCAATGAAACTGAGGAATTTGTACTATCCATAGATGAACAAAGCAATGAAATTGTTGTCTGGGATGCTCTGACGGCAGAGATAGTGGCAAGGTTGCCTTCCAACCATATTGGTGCGCCCCGTTGGCTTGAGCACTCACCAACAGAGGCTGCTTTTGTTTCCTGTGGAACCGATAGGTCAGTTCGGTTTTGGAAGGAAATTCTCTAG 1455 45.02 MGHASLNSQRFKTFEQIQAQISSLSLSFPPKSHLSDSQMDELQRKMEPNLEQTLQEGKLYRQINALIVAYLRDYNLTQAASAVASATMTPLNVDTPPYKLIDLVAKGLAVEKDEMLKGGVPSAAFLDSGAVMPVTYGSIPAPRTGYDRFAVHDTKGSSKSFPKHETRHVSEHKNLARCARFSLDGRFVATGSADMSIKLFEISKIKQMMLPDANTRDGPVRPVIRTFYDHIQPINDLDFHPQSTVLISGAKDHTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPVAHLYDVNTFQCYLSANVQDLGISASINQVRYSSNGDMYVTASKDGAIRLWDGVTANCVRSIVGAHGTAEATSASFTKDQRFVLSCGKDSSVKLWEIGSGKLVKQYLGAAHTQLRCQAVFNETEEFVLSIDEQSNEIVVWDALTAEIVARLPSNHIGAPRWLEHSPTEAAFVSCGTDRSVRFWKEIL* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5559255 5576076 + Vvi17g447 Vvi17g447 779144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g447 484 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Vvi17g447 484 Pfam WD domain, G-beta repeat 166 200 IPR001680 GO:0005515
Vvi17g447 484 Pfam WD domain, G-beta repeat 275 296 IPR001680 GO:0005515
Vvi17g447 484 Pfam WD domain, G-beta repeat 354 392 IPR001680 GO:0005515
Vvi17g447 484 Pfam WD domain, G-beta repeat 323 349 IPR001680 GO:0005515
Vvi17g447 484 Pfam WD domain, G-beta repeat 224 259 IPR001680 GO:0005515
Vvi17g447 484 SUPERFAMILY WD40 repeat-like 161 481 IPR036322 GO:0005515
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Vvi17g447 484 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 46 483 IPR044633 GO:0005848|GO:0031124
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 402 IPR001680 GO:0005515
Vvi17g447 484 Gene3D - 152 482 IPR015943 GO:0005515
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 352 393 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 396 438 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 441 481 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 265 303 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 306 349 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 162 201 IPR001680 GO:0005515
Vvi17g447 484 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi17g447 484 CDD WD40 165 481 - -
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 261 - -
Vvi17g447 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g447 K14406 CSTF1; cleavage stimulation factor subunit 1 - vvi:100267233 944.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32