Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g448 ATGTGGAGATCCTCGACGCCATTAACGTCTCTCCAACTCCGCAGGCTTCTTCTTCGCTGCTTCTCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTAGTACAGTCTTATTGCCTTAGCCCAACTCTCTCCCTAGATCCCTACTGTCTCTGTTCCTCACAACGCCACTTTGTCTCTCCTTCGTTTCCTCTCTCTAGGCGCTTCTCATCCCAACCAAACAACAGTGCCGATGATGATCACTCCCAAATCGCTCAATCTCTCTCTTCTGAACTCCTTAAGGATCCGGATTCAGAGCCTGTTCCCATTATCCAAAGGCTCCAGCTCAGCTTTTCTCACATTACTCCCTCTCCTCCCCTTATCCTCCAAACACTTAATACTTCCCCTGATGCTGGCCGTACAGTTTTAGGGTTTTACAAATGGCTCTCCTCGAACCCAAAATTTGTTCATTCTGATGAAACCATCTCCTTCTTTGTCGATTATTTCGGTCGCCGGAAAGATTTCAAGGCCATCCACGAGGTACTAATGGATGGTCGCAACTTCGCCGGTGCTAAAACCCTAGAGTCGGCAATCGACCGGCTTGTCCGGGCGGGCCGGGCCACGCAGGTGGTTTCCTTCTTTGATCGAATGGAGGTGGATTATGGATTCCGGAGAGACCGAGAATCGCTGACAATGGTTGTTTCGAAGCTTTGCGAACATGGATTTGCCAGTCATGCGGAGAAAGTGGTGAAAAATGTGGCCAATGAGATTTTTCCTAATGAAACGATCTGTGATTTGCTTATTAAGGGGTGGTGTGTTGATGGGAAGCTTGATGAAGCTAGGAGGTTGGCAGAGGAGATGTTTAGAGGAGGGTTTGAAATTGGTACAATGGCCTATAATTCGATTCTGGATTGTATCTGTAAGCTTTGTAGGAAAAAGGATCCATTTCGTCTTGAATCCGAGGCAGAGAAGATTTTGGTGGACATGGATGTTGCTGGGGTTCCACGCAACGTGGAAACTTTTAATGTTTTGATTACTAATTTATGTAAGATTAGGAAGACTGAGGATGCAATGAAGTTGTTTTATAGAATGGGTGAATGGGGATGTTACCCTAATGAAACCACATTTCTTGTTTTGACAAGGAGTTTATATCAGGCAGCAAGGGTAGGAGAGGGTGATGAGATGATTGATAGGATGAAATCTGCTGGGTTCGGGAATGCACTTGATAAGAAGGCATATTATGAGTTTATAAAAATTTTATGTGGGATTGAGAGGATCGATCATGCTATGAGTCTTTTTTCAAAGATGAAGGAGGACGGATGCAAACCCGGGATCAAGACATATGATTTATTGATGGGGAAGTTGTGTGCTCATGGTCGCCTTGATAAAGCAAATGCACTCTTCAGTGAAGCAGTGAATAGAGGGGTACCTGTGGAATCCAAGGCTTATAAGTTGGATCCAAGATTTGTGAAGAAACCCACAGTGGCAAAGAAGGAGAAAAAACGAGAAACATTGCCTGAGAAAATGGCCCGGAAGAGGAGGCGCCTTAGAAAAATCAGACTCAGTTTTGTGAAGAAGCCTAAACGAATGCGGCGAGCATTTTGA 1599 44.65 MWRSSTPLTSLQLRRLLLRCFSSSSSSSSSSSSSSSSSLVQSYCLSPTLSLDPYCLCSSQRHFVSPSFPLSRRFSSQPNNSADDDHSQIAQSLSSELLKDPDSEPVPIIQRLQLSFSHITPSPPLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDGRNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASHAEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDCICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMGEWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIERIDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKLDPRFVKKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKPKRMRRAF* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5578564 5580163 - Vvi17g448 Vvi17g448 779145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g448 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vvi17g448 532 Pfam PPR repeat 264 290 IPR002885 -
Vvi17g448 532 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Vvi17g448 532 TIGRFAM PPR: pentatricopeptide repeat domain 413 442 IPR002885 -
Vvi17g448 532 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 48 530 - -
Vvi17g448 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi17g448 532 Gene3D Tetratricopeptide repeat domain 156 314 IPR011990 GO:0005515
Vvi17g448 532 Pfam PPR repeat family 414 454 IPR002885 -
Vvi17g448 532 Pfam PPR repeat family 335 381 IPR002885 -
Vvi17g448 532 PANTHER ATPASE EXPRESSION PROTEIN 3 48 530 - -
Vvi17g448 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vvi17g448 532 Gene3D Tetratricopeptide repeat domain 315 397 IPR011990 GO:0005515
Vvi17g448 532 Gene3D Tetratricopeptide repeat domain 398 472 IPR011990 GO:0005515
Vvi17g448 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g448 - - - vvi:100262070 981.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33