Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g451 ATGCATGGCTTGGGCGGTGGTGAGAGGGTTCCTCTTTTGGGTAGAGAAGGAGGAAGAAAGAGAAATGACACTTTGGTGAATGGTCATTTGACAGACCTCGAGCATGGGGATGCAATACCGGCTGCTAACGTGGGGTTTTGCAGAGTGTTGTCTCTGGCAAAGCCCGATGCAGGAAAACTGGTTCTTGCTACAATTGCTCTGTTGATTGCGTCCACATCAAGTATTCTGATTCCGAAGTTTGGTGGAAAAATAATAGACATTGTATCAAGGGAGATCATAACACCAGAACAGAAAACCGAAGCTCTGAATGCAGTCAAGAACACTATACTAGAGATCTTCTTAATTGTTATAGTTGGTTCCATTTGCACAGCACTTCGGGCATGGTTGTTTTCTTCTGCTAGTGAAAGGGTTGTAGCTCGGCTGAGAAAGAACTTATTCAGTCACCTTATTCAGCAAGAAATAGCCTTTTTTGATATTACTCGGACAGGGGAGCTTCTAAGCAGATTATCTGAAGATACCCAGATCATAAAAAATGCTGCAACTACCAATCTTTCTGAGGCCCTAAGGAATCTATCGACTGCATTTATTGGTCTTGGTTTCATGTTTGCGACATCATGGAAGTTGACATTGTTGGCTTTGGCTATTGTTCCTGCTATCTCTGTGGCTGTGCGTAAATTTGGCCGTTTTCTTCGAGAACTTTCTCACAAGACTCAAGCTGCAGCTGCATTAGCTGCTTCAATTGCTGAGGAATCCTTTGGTGCTATACGCACAGTGAGATCTTTTGCTCAAGAAGCTTACGAAATTTCACGCTATTCTAGTCAAGTTGAAGAGACATTGAATCTTGGAATTAAACAAGCTAGAGTTGTTGGACTTTTCTTTGGTGGCCTTAATGCTGCATCCACACTATCAGTCATCGTAGTAGTGATATATGGAGCTAATTTGACGATCAATGGCTCCATGAGCCCTGGTGCTCTTACATCCTTCATTCTTTATAGCCTGACAGTTGGATCCTCTGTATCTGGACTGTCTGGGTTATACACAGTAGCAATGAAAGCTGCAGGAGCCAGTAGGCGGGTTTTCCAGCTTCTGGATCGTGTCTCATCGATGCCTAAGTCGGGCAACAAATGTCCTTTGGGAGACCAAGATGGAGAAGTAGAGTTAAATGATGTCTGGTTCGCCTATCCATCTCGTCCTGACCATATGGTACTCAAGGGAATAACATTAAAACTGCAGCCTGGTTCAAAGATTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAAACCACAATAGCAAACTTGATTGAAAGGTTTTATGATCCCATCAAGGGAAGGATTTTACTAAATGGGGTTCCACTGGTGGAAATATCACATGAACATCTACACAGAAAGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACTGCTCCATAGAGGAGAACATTGCATATGGTTATGAAGGCAAAGCCAGCAGTGCTGATGTAGAAAATGCAGCTAAAATGGCCAATGCCCATGAGTTCATATCAAAATTTTCTGAAAAATATCAAACCCATGTTGGAGAACGTGGTGTAAGGCTCTCAGGAGGCCAGAAACAGAGAGTAGCAATTGCAAGGGCTCTATTGATGAACCCAAGGGTTCTCCTCCTGGATGAAGCCACAAGTGCTCTGGATGCTGAAAGCGAATACCTGGTGCAGGATGCCATGGATTCTCTGATGAAGGGCAGGACTGTTCTAGTTATAGCCCATAGGCTCTCAACTGTCAAGAGTGCAGACACCGTTGCCGTAGTTTCAGATGGTGAGATTGTTGAAAGTGGCACACATGACGAGCTCCTCGACAAGGATGGCATTTACACTGCATTAGTAAGGAGGCAGCTGCAAGGACCAAGAAATGAAGTCTAG 1896 44.15 MHGLGGGERVPLLGREGGRKRNDTLVNGHLTDLEHGDAIPAANVGFCRVLSLAKPDAGKLVLATIALLIASTSSILIPKFGGKIIDIVSREIITPEQKTEALNAVKNTILEIFLIVIVGSICTALRAWLFSSASERVVARLRKNLFSHLIQQEIAFFDITRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALAIVPAISVAVRKFGRFLRELSHKTQAAAALAASIAEESFGAIRTVRSFAQEAYEISRYSSQVEETLNLGIKQARVVGLFFGGLNAASTLSVIVVVIYGANLTINGSMSPGALTSFILYSLTVGSSVSGLSGLYTVAMKAAGASRRVFQLLDRVSSMPKSGNKCPLGDQDGEVELNDVWFAYPSRPDHMVLKGITLKLQPGSKIALVGPSGGGKTTIANLIERFYDPIKGRILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGYEGKASSADVENAAKMANAHEFISKFSEKYQTHVGERGVRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSADTVAVVSDGEIVESGTHDELLDKDGIYTALVRRQLQGPRNEV* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5620015 5627317 + Vvi17g451 Vvi17g451 779148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g451 631 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Vvi17g451 631 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 5 627 - -
Vvi17g451 631 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g451 631 PIRSF ABC_prm/ATPase_B 22 631 - -
Vvi17g451 631 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vvi17g451 631 CDD ABC_6TM_AtABCB27_like 63 359 - -
Vvi17g451 631 Pfam ABC transporter transmembrane region 60 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g451 631 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Vvi17g451 631 Gene3D ABC transporter type 1, transmembrane domain 45 374 IPR036640 GO:0005524|GO:0016021
Vvi17g451 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Vvi17g451 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Vvi17g451 631 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g451 631 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016021
Vvi17g451 631 Gene3D - 379 629 IPR027417 -
Vvi17g451 631 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 5 627 IPR039421 -
Vvi17g451 631 SMART AAA_5 412 606 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g451 - - - vvi:100248338 1184.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1020 Vvi17g451 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34