Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g454 ATGAGGTGGGAAAGATTGCAGCTTCTGCGAGAAGAAGCTCCGGGAATGGGTGCTGTTGAGATTTCTGGGCCAGGGAAGAGGTGGGGACACACCTGCAACGCCATTAAAGGAGGAAAACTCCTCTATATTTTTGGGGGTTATGGCAAAGATAACTGTCAGACGAACCAAGTACATGTCTTTGACACTGTTAAAAAAACATGGAATGAGCCCATGATAAAAGGCAGCCCGCCTACTCCAAGGGACAGTCACAGCTGTACAACTGTTGGAGACAATCTGTTTGTGTTTGGGGGTACAGATGGGATGAATCCTCTCAAGGATTTGCATATTCTAGACACGTCTACACATACATGGATATCTCCAAGTGTAAGAGGCGAAGGACCAGAGGCACGGGAAGGTCATACTGCAGCCCTTATTGGGAAGCGACTTTTCATATTTGGTGGCTGTGGCAAATCTTCAAACGATTCGGATGAAGTTTACTATAATGATCTATACATATTGAACACTGAGACCTTTGTATGGAAACGCGCCCAGACATCGGGTACCCCACCAACTGCACGTGATAGCCACACTTGCTCATCTTGGAAGAACAAAATCATTGTGATTGGTGGTGAAGATGCATATGACTATTATTTATCTGATGTCCACATCCTTGATGCAGATACTCTTGTTTGGAGGGAGCTGAACGCTTCGGGTCAGATGCTGCCACCTCGAGCTGGTCATACAACAGTTGCTTTTGGCAAGAACTTGTTTGTTTTTGGGGGATTTACTGATGCCCAAAATCTTTATGATGACCTTCATATGCTTGATGCTGATACTGGTTTATGGACCAAGGTATTGGCTACAGGAGATGGACCTTCTGCTAGATTTTCTGTGGCTGGGGACATTTTGGATCCACAGAAGGGGGGTGTTCTCGTTTTTGTTGGTGGCTGCAACAAGACTCTTGAGGCACTCGATGATATGTACTATTTGCACACAGAACTTGTGAGAGAAAATGGGCGAGATGAGCGAAAGCTAGAGAGGCTATCTATGAGGAAGCAGTTGAAGCTAAAGTGCCAAGAACAATACCTTCCTGCGCCAGGACATGATAAAGCTCTGCTGACAGTTGGGGCGAATGCTGTTCTTTGCCAATCCAGGCCTTCGGCAAGTCATGGGCAAACAAGCCAACAAAATTTTCCAATTAATAGCTCCCAGATTCTTCAGGGAAAGAAGATATTTCAAGCGAACATTACCGAAAGCTTCCCTGATGGATTTACTATTGAAACTATTATAGATGGAAAGCCTTTGCGTGGAATATTATTTTCCAACAAGCCAAGCAATTCAAACATGGCTAAGTATAATTCCAGTAGGAAGAGAGCAGCTGGAGAAGTTGGTGGTATTAAGTTGAATGACAGTCAGAAGAGAAAACCAAAAAATGCTAGACCCTTCAAGCAGGATGAAATTGAGCACAGACAGGCTGATGTTGCCATAGGAAAGGAGTCCATATCATGTGAACGCCAAACAGAAGCCGCGGCTGCTGGTTTGAATAATTTAGCAACCCCTAATGATTCTCAGGCCCAGACAGAAGCTGCTGCTGCTGCTGTTTCAGAGAATCCAGAACCTACTGGTGATTCTCACCCTCAAAAGGTTACTGGAAACTCATCGGTGTTGATGCAGTCAATCCTGAAATTGGAATATGGAAGGACAAATGATGCACTGAACCAAAGCACTGAGTCTCCAGCAGAGATTACATCCACCGCCGCAAAGGAATGCATTTCTTTGCCCCCAAAAGAAGGAGACCATGGGGCACCAACCACTGAAGAGAAGGCAAAATCATTTTGA 1818 44.99 MRWERLQLLREEAPGMGAVEISGPGKRWGHTCNAIKGGKLLYIFGGYGKDNCQTNQVHVFDTVKKTWNEPMIKGSPPTPRDSHSCTTVGDNLFVFGGTDGMNPLKDLHILDTSTHTWISPSVRGEGPEAREGHTAALIGKRLFIFGGCGKSSNDSDEVYYNDLYILNTETFVWKRAQTSGTPPTARDSHTCSSWKNKIIVIGGEDAYDYYLSDVHILDADTLVWRELNASGQMLPPRAGHTTVAFGKNLFVFGGFTDAQNLYDDLHMLDADTGLWTKVLATGDGPSARFSVAGDILDPQKGGVLVFVGGCNKTLEALDDMYYLHTELVRENGRDERKLERLSMRKQLKLKCQEQYLPAPGHDKALLTVGANAVLCQSRPSASHGQTSQQNFPINSSQILQGKKIFQANITESFPDGFTIETIIDGKPLRGILFSNKPSNSNMAKYNSSRKRAAGEVGGIKLNDSQKRKPKNARPFKQDEIEHRQADVAIGKESISCERQTEAAAAGLNNLATPNDSQAQTEAAAAAVSENPEPTGDSHPQKVTGNSSVLMQSILKLEYGRTNDALNQSTESPAEITSTAAKECISLPPKEGDHGAPTTEEKAKSF* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5641389 5648710 + Vvi17g454 Vvi17g454 779151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g454 605 PANTHER KELCH REPEAT DOMAIN 1 454 - -
Vvi17g454 605 MobiDBLite consensus disorder prediction 583 605 - -
Vvi17g454 605 Pfam Galactose oxidase, central domain 39 87 - -
Vvi17g454 605 Pfam Galactose oxidase, central domain 139 192 - -
Vvi17g454 605 Pfam Galactose oxidase, central domain 89 138 - -
Vvi17g454 605 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 454 - -
Vvi17g454 605 SUPERFAMILY Galactose oxidase, central domain 21 256 IPR011043 -
Vvi17g454 605 MobiDBLite consensus disorder prediction 461 478 - -
Vvi17g454 605 MobiDBLite consensus disorder prediction 510 524 - -
Vvi17g454 605 SMART kelc_smart 197 247 IPR006652 GO:0005515
Vvi17g454 605 SMART kelc_smart 40 90 IPR006652 GO:0005515
Vvi17g454 605 SMART kelc_smart 91 140 IPR006652 GO:0005515
Vvi17g454 605 Gene3D - 231 329 IPR015915 GO:0005515
Vvi17g454 605 Gene3D - 3 230 IPR015915 GO:0005515
Vvi17g454 605 Pfam Galactose oxidase, central domain 236 286 - -
Vvi17g454 605 MobiDBLite consensus disorder prediction 435 478 - -
Vvi17g454 605 MobiDBLite consensus disorder prediction 510 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g454 - - - vvi:100251831 1225.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35