Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g457 ATGTCAATTTCCAAAGTTCACTGCTCAGTCACAAATTCAGTGGGAGCTCCTGAATGCCATTTGGACAGTGACTTCGAGAAATCTGCTACTCCCCTCATTGATGATTTAATTCCATCCAGTGCCTCAGCAGCTGCTTCAGGCATTGGTTTTGAAAAGTTTCCTGGTCAAATTATCAAAGGTGCAAGCCCATTCAGACTTCTACAAGACTATGCTTCTGACGACAGTACAGAAAATGGTGATGTGCCATGTGCTGAAGATGTTATCCCTGTAACTGCGTCACCATCAGTCACAGCTGATACTGGTTTGCATAGAGATATTAAATATAATCTGGACTCTGGTCTAGGATCTGAGCGCTCTTGCAGGACTGAGAGGAGTTTTGAGCCATCCTCTGAACCTGAATCACCAGTGGATGTAAAAGAAGTTAAAACATCTATTGCTACCAGAACCACTGATGAAAATGTTTTGATTCATGAAAATGAGGCACCTATTTCCCATGGTGCTTCTGTCAGGGATGGCCATGAAAAAGGTGCTGGTGGTGGTGTTGATATTGTTCCTGAGAGTGGGAAGTCTCAGAAGGAAATGCCTCCACTGAAAATTGATGAGTTTGGGCGTTTGGTCAAAGAAGGTGCTAGTGACAGTGATTCTGATGATTCACGCTATGCTAGGAAACGTGGTAAAAGAGGGAGAAGTAGGAGCCGTAGCCGATCTCCTCCAGATAGGAGGAGGAGGAGGAGTCCACTGAGGAGAAAGGAGAGGCGAAGCAGATCTCGCAGTTGGTCTCCTAAGAAGCGAAGAAGCAGGAGCAAGTCCCCTGCTTTTAGGCGTCTTGGTGAGTATGGTGGGGACAAGATGAAACGGGACAAGGGTCAGATGCCGACCTGCTTTGACTTTGTTCGAGGCAGGTGCTACCGTGGAGCATCATGTCGATATCTGCACCAGGACAGTAGCAATCGTGATGGATCAAGGCTCCATAAGGATAAAGAACAGTATCCTGAAGATCCACCCAATTCAAATAATATTAATTTATGTGAGGGGAATAAGAATATCCCAGTAAAAATATATGCTCAGGAGCATGATGAAAACAAGACCCAACCAGTTCAATTCTCTCAGGATGCAACTGATGGCAGCTTTTGCGCTCCAAAAGATGGGGATGTTAATGACAAAAGAGAGGAAAATTCTGCCAGGGATTCCATGCAAGCTGTTGCTTCAGATCAACATGGTAAATCTGGGAGTTGTGGAGATGCAACTGCTCATGTGCTGGAAATGCAAGAAGTTCAAGAAGGGCCTGCAAAGGCTGCCACTCATGTTCTTGATAATGAGAATTTTCAGGTACCAGAGGAGACCCATCAGCCATTTTCAGTTGACTGTTTTCCCTCTCAATCAGTTACTGTAACTGATGCCGATAACCTGAAGTTAGCTGGTGATACTCCTCAAGGCACACTTTTTTCCTCTGAAAGTAAAGCAATTCAGCAATCTCAAGCCAATCTTTCCATTCCTGCTCTTCAAAATGCGGCTCATGAGTCTCATCATGTAGATGGCTCTTCCATGTCTGGTTCTTCACCTGATCAAATGCCTACAACTTTCTCAAATAAGCTTCCTTCAAGTGAACCTTATGCAAAGAAGATCTCTTCCAATCCTTTGCACCCTGGAGCAAGTTCTACAAGCCAATCGGTCTCAGCTGAAGGTTTTTCATCTCAATCTTTGGCACCTAGGGAGTTATCGTCACCTGGTTCCTCTGCTGTAGATTTCCCACATCATCCTTCCCAGTTGCCTCCTCCGCCTCCATTTATGCAAGGGGTAAATGCCCCACATTTGCCACAGCCTCCAAGGGATTACAACTTGCTGCCACAAACCACAAACTTTCCATTTCAATCTGCCTCAGGCGAAAGTTTTTCAACGTATCAAGCTTCACTATCCAATCAACAGTCTCATTTCTCTATAACACCAAATTCCTCTTGGACTTCCATGCTGCCACCACCACCTCCAGTGTCACATTTTAATGATTCTGCTGTAAATGCAGTGACTGTCACTGCTGGTGTCCCATTGCAATATCAGCAGACTCATCTGCCTCCAAGGAATGAATTTATTTCTCAGAGTTTTGCAACTTCCCATCCGACTAAATTGCCCACTCATTCTCAGCCGGGTGAGTTTCAGCACCGTGCCTACCCTCCTATGCAGGAGCCACATCTACCTCCTTTGCAGATGGAACCAAAGTCTCTTCATTTGGGCAACCCATCAAGCCAACAATTTGGAGGCCCTAGTCTTGTGAGGGAAGATCGCTTTTCTCAGTTTCCAGTGCAGGGTTTAATTCCTTCAAGTTCCTTTGCTCAGGGCAGCATGTATCCTCAACCTATATCTTATTTGAGGGGATCACCAGCGAATAAAGTGCAACCTTTCCCTGTTGAGGATGTTCCTCCAGGTGAAATTCTTAAGTCATCTTCTCAGATTCATACTTTCTCACAGCAGAAGCAACCACCATATGATCTGTCACACTCTACATCTGATGCTTTTTCTGTACATCTGGGTGTGCCTGGCAAGATCAGTTCTTCTATGTCAAGATACCCATCAGATCTCCTGGACAGGAATCAGTCATCTCGTTTGTCAGACTTTGGCGGATCACGAATTTCAGCACACTATAATCCTTATGCATCTACTTTTGAGCAGCCACTTAGCTCCAAATTCAGTTCTAATGTTTTCAGACAAGAGAAGGACACGCCTTATAGCAATAAATATGATATGCCATTCAGCTTGAGCCATGTTCCAGCTGATGAGCCTGGTGTTGGTAATCTTGCATCAAGACAGACAATCTCCTCGCCTAATTCTGCCACTGCTGGTCGACAGGTTTTGTCTAGGTCAGGAGGTGACCAATATGATCCACTTTTTGACAGCATTGAGCCATCTTCAAACTCATTTAGAAAATTTGATCACGTTCAAAAGCTGGAACCTACCATTGATTCTGACATCATGTTAAGACTTGGTGGCTCACATAAGCCATTGGATGTGGAAGAAAACAATAAGCACAAAGAGGTTGAAGCAGTTGCTGTAACTACATCTCTTGAAAATGATGAATATGGTGAAACTGCTGATGCAGAGGTAGGGGCTGTTGAGAATGGTAGCCCAAGTAGTCCGATTGACATAGCAAACACAGCTGCAGGAGAGATTGAGATTGATCAGATTAAGTCGCCAGGGAAGAGCAAGAAAAGGAAGGACTCCAGATCAATGAAGCTTTTCAAAGTTGCCCTTGCAGACTTTGTGAAAGAGGTGCTAAAGCCATCATGGCGACAGGGTAATATGAGCAAAGAGGCATTCAAGACCATTGTCAAAAAGACAGTTGATAAGGTATCTGGAGCTATGAAGAGCCACCAGATACCAAAGTCTCAAGCAAAGATAAATCACTACATTGATTCATCTCAGCGGAAACTGACAAAACTTGTGATGGGGTATGTTGACAAGTATGTCAAAGCATGA 3468 44.43 MSISKVHCSVTNSVGAPECHLDSDFEKSATPLIDDLIPSSASAAASGIGFEKFPGQIIKGASPFRLLQDYASDDSTENGDVPCAEDVIPVTASPSVTADTGLHRDIKYNLDSGLGSERSCRTERSFEPSSEPESPVDVKEVKTSIATRTTDENVLIHENEAPISHGASVRDGHEKGAGGGVDIVPESGKSQKEMPPLKIDEFGRLVKEGASDSDSDDSRYARKRGKRGRSRSRSRSPPDRRRRRSPLRRKERRSRSRSWSPKKRRSRSKSPAFRRLGEYGGDKMKRDKGQMPTCFDFVRGRCYRGASCRYLHQDSSNRDGSRLHKDKEQYPEDPPNSNNINLCEGNKNIPVKIYAQEHDENKTQPVQFSQDATDGSFCAPKDGDVNDKREENSARDSMQAVASDQHGKSGSCGDATAHVLEMQEVQEGPAKAATHVLDNENFQVPEETHQPFSVDCFPSQSVTVTDADNLKLAGDTPQGTLFSSESKAIQQSQANLSIPALQNAAHESHHVDGSSMSGSSPDQMPTTFSNKLPSSEPYAKKISSNPLHPGASSTSQSVSAEGFSSQSLAPRELSSPGSSAVDFPHHPSQLPPPPPFMQGVNAPHLPQPPRDYNLLPQTTNFPFQSASGESFSTYQASLSNQQSHFSITPNSSWTSMLPPPPPVSHFNDSAVNAVTVTAGVPLQYQQTHLPPRNEFISQSFATSHPTKLPTHSQPGEFQHRAYPPMQEPHLPPLQMEPKSLHLGNPSSQQFGGPSLVREDRFSQFPVQGLIPSSSFAQGSMYPQPISYLRGSPANKVQPFPVEDVPPGEILKSSSQIHTFSQQKQPPYDLSHSTSDAFSVHLGVPGKISSSMSRYPSDLLDRNQSSRLSDFGGSRISAHYNPYASTFEQPLSSKFSSNVFRQEKDTPYSNKYDMPFSLSHVPADEPGVGNLASRQTISSPNSATAGRQVLSRSGGDQYDPLFDSIEPSSNSFRKFDHVQKLEPTIDSDIMLRLGGSHKPLDVEENNKHKEVEAVAVTTSLENDEYGETADAEVGAVENGSPSSPIDIANTAAGEIEIDQIKSPGKSKKRKDSRSMKLFKVALADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINHYIDSSQRKLTKLVMGYVDKYVKA* 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5669940 5674487 + Vvi17g457 Vvi17g457 779154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g457 1155 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 4 1155 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 315 332 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 310 344 - -
Vvi17g457 1155 ProSiteProfiles Zinc finger C3H1-type profile. 288 315 IPR000571 GO:0046872
Vvi17g457 1155 SMART c3hfinal6 288 314 IPR000571 GO:0046872
Vvi17g457 1155 MobiDBLite consensus disorder prediction 931 955 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 481 610 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 113 290 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 931 950 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 193 223 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 366 412 - -
Vvi17g457 1155 Gene3D - 220 330 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 276 290 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 224 270 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 381 395 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 481 574 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 586 602 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 396 410 - -
Vvi17g457 1155 MobiDBLite consensus disorder prediction 117 138 - -
Vvi17g457 1155 PANTHER EXPRESSED PROTEIN 4 1155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g457 - - - vvi:100246698 2149.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33