Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g458 ATGGATTTGGAAGTGGCACCCTGTGATGCAAGCTCTAGTCTCTGTGCCCAAAAGAAGAGAAAGAAGCACAAGCAAAGGCACAATTCCATGGAAAATAATCATACAGATCATGGTCATCGGGAGGGTACTTCTTCAATGGAGAATAGACCCCTTGGTAGTGATTCACCTCAAGAGCCTCCAGATAATAGCAGTGCAAAGCTGGATCTGGAAGCCCAACTTGATTCAGATGTGAAAAGGTTGGAGAAAAACAAAGGCAGAAACAAGCATGAGAAGAGACGTTATTCTCTGAAAGATAAGGCTTTAGGCTATGGTGCTTCAGAAGAGGGTACATCTTTAAAGAACCTATCAATGGAACAAAAGTCTGCAGTTAACACACGCTTAAATTTGGAAAAGACTGAACCTAGTGCAGAAGTGGGTTCATCTCATAAAAAGACTAATAAGGGAAAAAGGTGGAAGAAGAGGCATAATGACTTCAAAATTAATGGTACAGATCATGATCTTCGTGAGGGTGGTCATGTGCCTAGCACAGATTTAACAATTATCAACCATTCTGAAAAAGCGGATGTGAGTTTTATTTCATATCCTAGTTCAATAAAGAACCATGATGACAAAGCTGATGATGATGCTGCTTTGCTTGAAATGAAAAATGATGTTAATATCAATAAGAGGAAGACAAAAATCAAAACCTATGGCAGGAGAAAGACAAGGTTCTCCAATTCCTCAGAAAGTAATTTGGAATCTATGAAGGAAGATGGTATGAGCTCCTCAACGCAGGTTGTACAAAGTAATTCAACTGGGGTGTATTCTTTTAAACATTCACTTAATGACCCTGGATCTGTCCTTTCAGGGAATAAGTTGGCAAGGCTCCGGGTGGAAGATGGTACCTCAGTACATCCTCTGAAAGATATTGCAATGGAGGCAGCCTTTGTTAACTGTTCAGATAGTAAACCTACATCTGAGAAAAGGAAGAAGAACATGGTGAGCAATTTAAAAGATGCTACTGATGAAACTAGTTTTGTAAAGATGCCAGTTATCCCTGCTGGGAACTCTGAACCTGTAAATGGGGTTAAGCTAGATAAGATGAAGGGTGCATTGCAGGATGAGGCTGAGAACGTGGAGGAAGAAACTGAGGTGAAAGAAATAATTCCTTCTTCATCACATTTAGGTGCTATAAAAGATGATGTCAAAATAGTTAACAAAGAGGAGAATCCTCCACATACATCACAATCTCTTCCAGAAAGAGCTGTTAGTTGCCATTCCAGAAAGAAGCTCCTTATACTTGATGTGAATGGATTACTTGCTGATATTGTTCCATATTTTGTTGAAGGATATAAACCGGACATAGTAGTTTCACGGAAATCAGTTTTTAAGAGACCCTTCTGTGATGATTTTCTGCAGTTTTGCTTCGAAAGATTTGATGTTGGTGTTTGGTCATCAAGAACCAAGAAAAATGTGGATATGGTGCTTGAATTTCTTATGGCAGATGCCAGACACAAATTGCTTTTTTGTTGGGATCAATCCCAGTGTACCAATACGGGATTTACTACTCATGAGAATCCGCAGAAGCCCCTGCTTTTAAAAGAACTTAGAAAACTATGGGAAAAGCATGAGCCAAATCTTCGATGGGAAAAGGGAGAGTATAATGAATCAAATACATTGTTGTTAGATGATTCACCATGCAAGGCATTGCTGAATCCTGCATACACAGCAATCTTTCCCTATTCCTATGAGTACAAGGATGTTAAAGATAATATGTTAGCAACCGGAGGCAAGCTTCGGGTTTACCTTGAAGGGTTAGCCATGGCTGATAATGTTCAGAAGTATGTCAAACAAAATCCATTTGGTCAACGGGCTATCACAAAATCGAGTGCAACCTGGACTTACTATAGTAAGGTTGTTAGCAAATACTCATACACACAAGAGGAAGATGGCAGGAATTCTCATGCTTGTCGGCAGTGA 1959 39.66 MDLEVAPCDASSSLCAQKKRKKHKQRHNSMENNHTDHGHREGTSSMENRPLGSDSPQEPPDNSSAKLDLEAQLDSDVKRLEKNKGRNKHEKRRYSLKDKALGYGASEEGTSLKNLSMEQKSAVNTRLNLEKTEPSAEVGSSHKKTNKGKRWKKRHNDFKINGTDHDLREGGHVPSTDLTIINHSEKADVSFISYPSSIKNHDDKADDDAALLEMKNDVNINKRKTKIKTYGRRKTRFSNSSESNLESMKEDGMSSSTQVVQSNSTGVYSFKHSLNDPGSVLSGNKLARLRVEDGTSVHPLKDIAMEAAFVNCSDSKPTSEKRKKNMVSNLKDATDETSFVKMPVIPAGNSEPVNGVKLDKMKGALQDEAENVEEETEVKEIIPSSSHLGAIKDDVKIVNKEENPPHTSQSLPERAVSCHSRKKLLILDVNGLLADIVPYFVEGYKPDIVVSRKSVFKRPFCDDFLQFCFERFDVGVWSSRTKKNVDMVLEFLMADARHKLLFCWDQSQCTNTGFTTHENPQKPLLLKELRKLWEKHEPNLRWEKGEYNESNTLLLDDSPCKALLNPAYTAIFPYSYEYKDVKDNMLATGGKLRVYLEGLAMADNVQKYVKQNPFGQRAITKSSATWTYYSKVVSKYSYTQEEDGRNSHACRQ* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5684507 5694309 + Vvi17g458 Vvi17g458 779155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g458 652 MobiDBLite consensus disorder prediction 133 152 - -
Vvi17g458 652 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 61 640 - -
Vvi17g458 652 Gene3D - 366 617 IPR023214 -
Vvi17g458 652 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 61 640 - -
Vvi17g458 652 MobiDBLite consensus disorder prediction 29 44 - -
Vvi17g458 652 MobiDBLite consensus disorder prediction 234 260 - -
Vvi17g458 652 Coils Coil 358 378 - -
Vvi17g458 652 MobiDBLite consensus disorder prediction 46 62 - -
Vvi17g458 652 Pfam NLI interacting factor-like phosphatase 423 606 IPR004274 -
Vvi17g458 652 SMART forpap2 421 581 IPR004274 -
Vvi17g458 652 MobiDBLite consensus disorder prediction 1 96 - -
Vvi17g458 652 ProSiteProfiles FCP1 homology domain profile. 418 599 IPR004274 -
Vvi17g458 652 SUPERFAMILY HAD-like 419 609 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g458 - - - vvi:100263840 1268.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1034 Vvi17g458 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g458 . . . . . . . . . . Cma10g00292 Cma11g00214 . Car11g00193 Sed08g0286 Cpe20g00082 Cpe04g01454 Bhi02g00089 Tan09g2033 Cmetu02g0987 . . . . . . . . . . . . . . . Lsi02g00127 Csa01g00609 Chy12g01491 Cme12g01931 . . . . . Bpe15g00572 . . . . Cmo11g00216 . . Car13g00903 . . Cpe18g00711 Bhi08g01074 . . Lac10g0174 Hepe07g2454 . . . . . . . . . Lsi06g01406 Csa01g00303 Chy02g02435 Cme02g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013596 0 3 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 26