Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g46 ATGGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTGGCACCCTAATATCAGCAGTCAAAGTGGAGCAATTTGCTTGGACATTCTGAAGGACCAGTGGAGCCCTGCACTTACTCTGAAGACAGCACTCCTTTCTGTACAAGCCTTGCTCTCTGCCCCTCAACCTGATGATCCTCAAGACGCTGTGGTGGCTCAACAGTATCTTAAAGACTATCAGACCTATGTTGGCACAGCTCGATATTGGACAGAAAATTTTGCATCTTCTCGTGGACTTGAGGAAAAGGTACAAAAACTTGTGGAGATGGGCTTCCCTGAAGCTTCAGTAAGGAGTACCCTGGCAGCTTTTGGTGGTGATGAAAACTTGGCTCTTGAAAAGCTCTGCTGTGGCTAG 453 48.12 MGTPYEGGIFQIDIVLPDGYPFEPPRMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTYVGTARYWTENFASSRGLEEKVQKLVEMGFPEASVRSTLAAFGGDENLALEKLCCG* 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 394285 397861 + Vvi17g46 Vvi17g46 778743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g46 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 34 50 IPR023313 -
Vvi17g46 150 SUPERFAMILY UBA-like 105 148 IPR009060 GO:0005515
Vvi17g46 150 Pfam Ubiquitin-conjugating enzyme 2 102 IPR000608 -
Vvi17g46 150 CDD UBCc 2 103 IPR000608 -
Vvi17g46 150 SUPERFAMILY UBC-like 2 108 IPR016135 -
Vvi17g46 150 SMART uba_6 112 149 IPR015940 -
Vvi17g46 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 108 IPR000608 -
Vvi17g46 150 Gene3D - 117 148 - -
Vvi17g46 150 CDD UBA_II_E2_UBC27_like 113 148 IPR041974 -
Vvi17g46 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 144 - -
Vvi17g46 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 2 144 - -
Vvi17g46 150 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 111 150 IPR015940 -
Vvi17g46 150 Pfam UBA/TS-N domain 113 146 IPR015940 -
Vvi17g46 150 SMART ubc_7 2 108 - -
Vvi17g46 150 Gene3D Ubiquitin Conjugating Enzyme 1 116 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g46 K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:2.3.2.23] - vvi:100259387 309.301
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009524 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 4 1 1 1 0 1 1 2 1 33