Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g460 ATGTCCCAATGTTCATCTTCACTTACAAGTTACAAGTACAACAATCCTGCCCTTGTTTTGTTTCTTTTATTTCATACCCTTCTCTTATTTCAGCATAGTGGCTATTTAGGTGTTGGAAGATGCCTAAAAGTTTCTCCAGGATTTGATTCTTTGCAGCTTAATGATGATCATGAGAGAAGTAAGATGATCCCAAATTCAAGAGAGAGAGATTTTCAAGCAAAGCTAGAGGATGCCACCATCGAAGGGAAATTCTCGAAGGCACCATCTAGTTCAAGACAGTGGTCAGCATTTAGAAATCCACGGATTGTACGCGTTTCACGTTCCTTTGGAGGAAAAGATCGGCATAGCAAGGTTTGCACTGTAAGAGGATTGAGAGACAGGCGAATTAGGCTCTCAGTACCTACTGCTATTCAGTTATATGATCTTCAAGACAGGCTTGGGCTGAGCCAGCCTAGCAAGGTAGTCGATTGGCTGCTTGATGCCACTAAACATGAAATTGATAAACTTCCACCACTCCAGATCCCACAGGGAAATCTTGGTCAGTTCCATCAATCAATGCTTGTTTCTCATGAATTGGACCAAAATACAATTTTCTGCAAAGGTGGTGTGATATGTAGAGAAGTTGTGAATTGGCAATGTTATATGATATCGTAG 654 40.98 MSQCSSSLTSYKYNNPALVLFLLFHTLLLFQHSGYLGVGRCLKVSPGFDSLQLNDDHERSKMIPNSRERDFQAKLEDATIEGKFSKAPSSSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHEIDKLPPLQIPQGNLGQFHQSMLVSHELDQNTIFCKGGVICREVVNWQCYMIS* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5711517 5719116 - Vvi17g460 Vvi17g460 779157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g460 217 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 193 IPR005333 GO:0003700
Vvi17g460 217 ProSiteProfiles TCP domain profile. 111 169 IPR017887 -
Vvi17g460 217 Pfam TCP family transcription factor 111 174 IPR017887 -
Vvi17g460 217 PANTHER TRANSCRIPTION FACTOR TCP17 62 193 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14200 PF03634 TCP 1.40E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g460 - - vvi:100852855 265.003