Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g461 ATGGAGAATAAATTAAGAAAATTATTTTTGGGATTTAGATCTATCATTCACCTCGCCTCCATCACGCTCAAATCACTCCACAGCAGGTTTCTTTTCTATATGGCAATGCAGGAAGCGACTCCTGCCCCTCTTCACTCTGCTGCATTTGTTGGGAATGCCTTTGTGGATCAGTATTATCCCATTCTTCACCAAAACCCGGAATTGCTGTATAAATTTTATCAGGATTCAAGTGTGCTAAGCAGGCCAGATTCGAGTGGTAGTATGACCACAGTAACAACTTTGCAGGCAATCAATGACAAGATCATGTCATTCCATTATGGCGAATATAAGATGGAGATAGAGACTGCAGATGCTCAAGACTCTTACAAGGAAGGGGTGACTGTTCTAGTGACTGGAAGTGTAACTCTGAAAGATAACGTGAAAAGGAAATTTGGTCAATCATTCTTTCTAGCTCCACAGGACAATGGCTACTTTGTCTTAAATGATATTTTTACGTATATCGAGGAAAAGAAATCATTGCAGGAAAATTTTGCACCAGTTGATGGTATCAATGAAACTGCTCCAACAGCTGCCTTGACTCCAGATCCAGAGGCCAATCATGTTCCTGATCATCTTGTGGTAGACCCTGCAACACCATCCTTTGAGGAGGAGGAGGATCTGAATAATGTTGCTGAAGTTTGTGACCCATCAGATAATGAAGAAGGATCGGTTATTGAAGAAGAGGCTGTTGTTGAACCCCCATCTATTTCAAGTGAGAATGAAATTTCTACAGTAGTCGATTCAGCTCCTGCAGCACAAGAGGATGCTCCAAAGAAATCTTATGCATCAATTGTGAAGGTAATGAAAGGCAGTGCAACATCCACTCCAGTCTTTGCTACCAGTACAGTAAGGGCAGCACCTGCAAACATTGATCAACAGTTGGCTGGTTCTGCAAAATCTGCTCCGGCACCAGAGGCATGGACTCCTACTAGTGACAGTGCTCCTGAAAGTAGCAATATTAATGAAGAAGGTTTCTCCATATATGTACGGCATTTGCCTTTAAGTGCAACAGTTCCACAATTGGAAGAGGAGTTCAAAAAATTTGGCCCTATTAAGCAAGATGGCATCCAAGTCAGAAGTAATAAGCAGGGATTCTGTTTCGGCTTTGTTGAGTTTGAATCTTTGAGTTCGATGCAGAGTGCACTTGAGGCATCACCTATCACAATTGGGGATCGTCAAGCTGTCGTCGAGGAAAAAAGAACTACCACTCGTGTTGGCGCTAGTGGTAGAGGCAGATACCCTCCAGGAAGGGGTGGGTTCCGGAATGACAACTTCAGGGGCCGTGGAAACTTTGGTGGTGGCCGGGGCTATGGGCGGAATGAGTCCAGAAATCAGGGTGAGTATTCAGGACGTGCAAGGGGTCCAACTGGACGCAATGGAGAGGCTTATCAGCGGGTTAATCAGAATGGAAGTGGGAAGACTGGGCGCCAAGGTGGGATGGCGTGGAACTCAGCTTCTTCTTGA 1503 44.64 MENKLRKLFLGFRSIIHLASITLKSLHSRFLFYMAMQEATPAPLHSAAFVGNAFVDQYYPILHQNPELLYKFYQDSSVLSRPDSSGSMTTVTTLQAINDKIMSFHYGEYKMEIETADAQDSYKEGVTVLVTGSVTLKDNVKRKFGQSFFLAPQDNGYFVLNDIFTYIEEKKSLQENFAPVDGINETAPTAALTPDPEANHVPDHLVVDPATPSFEEEEDLNNVAEVCDPSDNEEGSVIEEEAVVEPPSISSENEISTVVDSAPAAQEDAPKKSYASIVKVMKGSATSTPVFATSTVRAAPANIDQQLAGSAKSAPAPEAWTPTSDSAPESSNINEEGFSIYVRHLPLSATVPQLEEEFKKFGPIKQDGIQVRSNKQGFCFGFVEFESLSSMQSALEASPITIGDRQAVVEEKRTTTRVGASGRGRYPPGRGGFRNDNFRGRGNFGGGRGYGRNESRNQGEYSGRARGPTGRNGEAYQRVNQNGSGKTGRQGGMAWNSASS* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5737661 5753594 + Vvi17g461 Vvi17g461 779158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g461 500 MobiDBLite consensus disorder prediction 413 500 - -
Vvi17g461 500 Pfam Nuclear transport factor 2 (NTF2) domain 50 166 IPR002075 -
Vvi17g461 500 SMART rrm1_1 339 410 IPR000504 GO:0003723
Vvi17g461 500 MobiDBLite consensus disorder prediction 474 500 - -
Vvi17g461 500 Gene3D - 318 420 IPR012677 -
Vvi17g461 500 SUPERFAMILY RNA-binding domain, RBD 328 445 IPR035979 GO:0003676
Vvi17g461 500 MobiDBLite consensus disorder prediction 307 331 - -
Vvi17g461 500 CDD NTF2 46 168 IPR018222 -
Vvi17g461 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 398 IPR000504 GO:0003723
Vvi17g461 500 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 34 491 IPR039539 -
Vvi17g461 500 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 34 491 - -
Vvi17g461 500 MobiDBLite consensus disorder prediction 317 331 - -
Vvi17g461 500 Gene3D - 42 170 - -
Vvi17g461 500 ProSiteProfiles Nuclear transport factor 2 domain profile. 50 166 IPR018222 -
Vvi17g461 500 SUPERFAMILY NTF2-like 46 167 IPR032710 -
Vvi17g461 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 414 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g461 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - vvi:100255231 853.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g31 Vvi17g461 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g461 Blo04g00794 . Bda06g00520 Bda15g00626 Bpe12g00522 . . Bma12g00963 . . Cma10g00293 Cma11g00210 Car10g00279 Car11g00190 Sed08g0279 . Cpe04g01457 Bhi02g00092 Tan09g2041 Cmetu02g1274 . Hepe09g0276 . . Cla06g01536 Cam06g1695 Cec06g1757 Cco06g1756 Clacu06g1662 Cmu06g1608 Cre06g2421 . . Cone13ag0032 Cone19ag0041 . . . . . Blo15g00340 Bda11g01760 . Bpe07g00754 Bpe15g00576 Bma03g00855 Bma08g00243 . Cmo10g00315 Cmo11g00213 . . . . . Cpe18g00709 . . . . . . . . . . . . . . Lsi06g01409 Csa01g00298 Chy02g02439 Cme02g01826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003246 4 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 2 50