Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g466 ATGCTCAAGGGCAGCAAAAAGCCTGTTAAAACAGAGTTGCCCCTTGTTGTTAATACACCTGGATGGGTAAAAGGTATTGGTCATGACATACTGGTGGATGTGTTAAAATATATTGCTCCTACCCATGTAGTTAAGATAAACATTTCTGCTGAGGGTAAGAATCTTCCATCTGGAGCATTCTGGTTGGATGAGGATCATAAAGAGTCAGTGAATCTAATTGAGGTCAGTTCAGCTCGTCAGGACTCTTTTAAGAGATCGGTCTTAGTACAAAAAGATGCAGGCCTTTTACGGGATTTACGAATAATGGCTTATTTCAGGCAGTGTTTTCCAAGTAACTTGAATATCACAACAATCAAAGAACTTGCACATGCATTGACCTCTCACCCTCCTTATGAAATTCCCATATCAAGTATCAAGATTAAGCATCTCCATTGCCAGGTCCCAAGTACTGAAATTCTATACAGTTTGAATGCAACTATTGTTGGCTTGGCAGTTAGTTCTGAAGATTCTGAAAATTTATCTCCATGCATTGGCCTTGGAATTGTAAGAGGCATCCACACATTCTAA 567 39.51 MLKGSKKPVKTELPLVVNTPGWVKGIGHDILVDVLKYIAPTHVVKINISAEGKNLPSGAFWLDEDHKESVNLIEVSSARQDSFKRSVLVQKDAGLLRDLRIMAYFRQCFPSNLNITTIKELAHALTSHPPYEIPISSIKIKHLHCQVPSTEILYSLNATIVGLAVSSEDSENLSPCIGLGIVRGIHTF* 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5795170 5797168 + Vvi17g466 Vvi17g466 779163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g466 188 PANTHER OS01G0354700 PROTEIN 8 186 - -
Vvi17g466 188 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 8 186 IPR045116 GO:0006396|GO:0051731
Vvi17g466 188 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 11 106 IPR032319 -
Vvi17g466 188 Gene3D - 3 109 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g466 K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] - vvi:100244933 360.147
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g466 . . . . . . . . . Cmo18g00109 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00338 Csa01g00809 . . . . . . . . . . Sed08g2553 . . . Cma18g00139 . . . . Bhi08g01437 Tan05g2057 Cmetu12g0118 Lac10g0399 Hepe07g2264 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31