Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g469 ATGGAGTGCAAGCCGTTGCCGGAGGCGGAGGTCAAGGCTTTATGCGAGCAGGCGAAGTCATTCCACGATCTCATCGAGCTGTTCCGGATCGGAGGGAAAGCTCCCGAAACCAATTATCTCTTTATGGGAGATTATGTGGATCGAGGATACTACTCAGTGGAGACTGTTTCGCTTTTAGTATCCCTGAAAGTTCGATATAGAGATAGAATTACAATTCTGAGAGGAAATCATGAGAGCCGGCAAATAACTCAAGTGTATGGTTTTTATGATGAATGCTTGAGAAAATATGGGAATGCAAATGTCTGGAAATATTTCACCGACCTTTTTGATTATCTACCTCTTACAGCTCTTATTGAGAGCCAGGTCTTCTGCTTGCATGGTGGACTCTCCCCATCATTGGATACATTAGATAATATACGTGCCTTGGACCGGATACAGGAGGTTCCTCATGAGGGCCCAATGTGTGATCTTTTGTGGTCTGATCCTGATGACCGATGTGGGTGGGGAATTTCCCCTAGGGGAGCTGGATACACCTTTGGCCAGGATATAGCTTCACAGTTTAACCACACGAATGGGCTTACTCTTATTTCTAGAGCTCACCAGCTTGTTATGGAAGGTTACAATTGGTGTCAGGAGAAGAATGTGGTGACAGTGTTCAGTGCACCAAATTACTGCTATCGATGTGGAAATATGGCTGCAATTCTTGAGATTGGCGAGAATATGGATCAGAATTTCCTTCAATTTGACCCAGCACCTCGACAGATTGAACCTGACACCACACGCAAAACTCCTGACTATTTTTTGTAA 807 44.61 MECKPLPEAEVKALCEQAKSFHDLIELFRIGGKAPETNYLFMGDYVDRGYYSVETVSLLVSLKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLTLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5814754 5818561 - Vvi17g469 Vvi17g469 779166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g469 268 Gene3D - 1 268 IPR029052 -
Vvi17g469 268 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 20 268 - -
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 10 37 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 39 66 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 72 96 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 107 133 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 136 163 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 192 212 IPR006186 GO:0016787
Vvi17g469 268 PRINTS Serine/threonine phosphatase family signature 214 230 IPR006186 GO:0016787
Vvi17g469 268 CDD MPP_PP2A_PP4_PP6 1 252 - -
Vvi17g469 268 SUPERFAMILY Metallo-dependent phosphatases 2 255 IPR029052 -
Vvi17g469 268 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-5 CATALYTIC SUBUNIT 20 268 - -
Vvi17g469 268 ProSitePatterns Serine/threonine specific protein phosphatases signature. 73 78 IPR006186 GO:0016787
Vvi17g469 268 Pfam Calcineurin-like phosphoesterase 20 201 IPR004843 GO:0016787
Vvi17g469 268 SMART pp2a_7 6 252 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g469 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] - vvi:100267243 552.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1443 Vvi17g469 ECH
Vvi1g809 Vvi17g469 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000292 4 4 4 4 5 4 7 4 4 4 4 4 7 4 4 6 4 11 7 4 3 4 4 4 4 4 4 11 3 5 145