Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g47 ATGGGTTGCGTTCAGAGCAAGAGAGCTTCCAGAGATGACCCGAGCGCGGCCGGGGAGTCGGACAGGCAGCGGGAGCTGGAGGAGCTGTCAAACGCTCTTAAGAATGTTGTTAAGGGTAGGAAGGAGGGAATGGAGGTCGCAAGGGGGGTGGAGAGGGAGAAGGTTACACGTGCCGGAGATTCCCCGGCGACGGAGCGGCGGCGACCGCGTCCGGAGCCGTACTTGAGGAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGATCGGCCAAGGAACGTACAGCAATGTTTATAAAGCAAGGGATCTAATTACAGGAAAGATAGTAGCTTTGAAAAAGGTTAGGTTTGATAATTTGGGGCCAGAGAGCGTGAAATTCATGGGAAGAGAGATTCTTGTTCTTCGAAAACTCAATCATCCCAATGTGATTAAGCTTGAAGGTTTGGTTACATCAAGAATGTCTTGTAGCCTCTACTTGGTTTTTGAGTACATGGAGCACGATCTCGCAGGCCTCGTTGGCCATGGCTCCTATCTCTCCACCAGCCAAGGCCGCAAATTCACTGAGCCACAGGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACAATGAAGGAATTCTAAAAATAGCTGATTTTGGACTGGCTACTTTTTTTGATCCTGACCGCAGGCGGCCCATGACTAGTAGAGTTGTCACTCTTTGGTACCGACCCCCAGAACTACTTCTTGGGGCCACTTATTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATTTTGGCGGAGTTGCTTGGTGGGAAGCCAATAATGCCTGGACGAACAGAGGTTGAACAAGTGCATAAGATATTCAAGTTATGTGGCTCCCCATCTGAAGAATATTGGAAGAAATCCAAACTGCCACATGCAACAATCTTTAAGCCGCAACAGCCGTACAAACGCTGTGTAGCAGAAGCATTCAAGGATTTCCCTTGTTCTTCGCTTCCTTTGATTGAAGCTCTTCTTTCAATTGATCCTGATGACCGAGGCACTGCCACTTCTGCTTTAAATAGTGAATTCTTTACTACTGAACCATATGCTTGTGAGCCGTCAAGTTTGCCAAAGTGTCCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTCAGAGCTCGTGATCGGGGTGGACGGGCAGTTCCAGCTCCAGAAGCCAATGCAGAGCTCCAAGCAAACTTGGATAAGTGGAGAGTGATGAATCCAGCAAATTCCGAGAGCAAGAGCGAGAAATTCCCGCCTCCCCATCAGGATGGAGCAGTTGGATTCCCTCACACATCACGCAATGGACCTGTATCATTTGGTGCAACTGATACTTCATTTAGCTCATCATTTTTCAATCTAAAGCACTCGACATCTGTTCGACATACTGGGACTGCAGGAGGCCCTTCAAAGAGAAAAAGCAGCAGAGCAGAGCCCCAAACAGCTCCATCTCGTAGGTTCCTCCGATTACTCAAGACATCCTCAACAACTCCATCAATGCATCCAAGCTCAAAGGGCAAAGAATCAGTTTCAGAAGTTTTTGGCAGCCAAAAAGTAAAGTAA 1764 48.13 MGCVQSKRASRDDPSAAGESDRQRELEELSNALKNVVKGRKEGMEVARGVEREKVTRAGDSPATERRRPRPEPYLRSQRGWPSWLLDALGDGIQDWTPRCANSFEKLDKIGQGTYSNVYKARDLITGKIVALKKVRFDNLGPESVKFMGREILVLRKLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLVGHGSYLSTSQGRKFTEPQVKCFMKQLLSGLEHCHNQGVLHRDIKGSNLLINNEGILKIADFGLATFFDPDRRRPMTSRVVTLWYRPPELLLGATYYGVGVDLWSAGCILAELLGGKPIMPGRTEVEQVHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCVAEAFKDFPCSSLPLIEALLSIDPDDRGTATSALNSEFFTTEPYACEPSSLPKCPPTKEIDVIKLRDEARRQRGVSGKANVVDGNRRVRARDRGGRAVPAPEANAELQANLDKWRVMNPANSESKSEKFPPPHQDGAVGFPHTSRNGPVSFGATDTSFSSSFFNLKHSTSVRHTGTAGGPSKRKSSRAEPQTAPSRRFLRLLKTSSTTPSMHPSSKGKESVSEVFGSQKVK* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 406867 413574 + Vvi17g47 Vvi17g47 778744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g47 587 MobiDBLite consensus disorder prediction 525 587 - -
Vvi17g47 587 MobiDBLite consensus disorder prediction 427 460 - -
Vvi17g47 587 Gene3D Transferase(Phosphotransferase) domain 1 197 434 - -
Vvi17g47 587 MobiDBLite consensus disorder prediction 1 25 - -
Vvi17g47 587 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vvi17g47 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Vvi17g47 587 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 61 560 - -
Vvi17g47 587 Pfam Protein kinase domain 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g47 587 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Vvi17g47 587 MobiDBLite consensus disorder prediction 40 74 - -
Vvi17g47 587 SUPERFAMILY Protein kinase-like (PK-like) 97 400 IPR011009 -
Vvi17g47 587 MobiDBLite consensus disorder prediction 476 508 - -
Vvi17g47 587 SMART serkin_6 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g47 587 PANTHER CELL DIVISION PROTEIN KINASE 61 560 - -
Vvi17g47 587 CDD STKc_CDK9_like 104 395 - -
Vvi17g47 587 ProSiteProfiles Protein kinase domain profile. 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g47 587 MobiDBLite consensus disorder prediction 40 75 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76319 PF00069 Pkinase 4.20E-65 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g47 K08819 - vvi:100264561 1149.81