Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g470 ATGACCAACAATACCCATCAATCCAGTAATACCCACCTCGAAGCCGTCTTCAAGCAGAAGAAGATCCTCCGATCCAGCGTCCGCAAAGCACTCAAGGGCATGGACCCCTCTTCCAGATCTCAAGAGGATAATGCAGTTCAGAATATCATCCTGGAAGCTCCATGGTTTAGATCTAGTCAGAGATTATGCGCTTATATAAGTTGCAGTTCTTTGCGAGAAGTTGATACATCAAAAGTTCTGTCAGAAATTCTACAGAATCCAGCCAAAGATGGTCATACACAGATGGGGAAAAAGCTTTATGTCCCACGTGTGGAGGACAAAAATAGTTACATGCGGATGCTGAATATTACACATATGGATGATCTAATTTCAAATTCAATGAACATTTTAGAACCAGCTCCAGTAGATGGTGATGGCAATGAACGTGAAGATGTTATGCAGGCAACTGACCCAGTTGACTTGCTCCTATTACCTGGACTTGCTTTTGACAAATCTGGAAGACGCTTGGGTCGTGGTGGAGGTTACTATGATGCCTTCCTGAAGAACTACCTAGAGCTTGTGAAGGAGCGGAATTGGAAGCAACCCCTCCTTGTTGCATTGTCGTATTCTGTGCAGATAATGGATGAGGGAGTTATACCAGTCACTCCAAATGATGTTCCTGTGGATGCTCTTGTATCCCCAGCAGGTGTGATCCCCATCACCACAGCTGCACAGGAGAGGTGTCATTGA 729 44.86 MTNNTHQSSNTHLEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLREVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEPAPVDGDGNEREDVMQATDPVDLLLLPGLAFDKSGRRLGRGGGYYDAFLKNYLELVKERNWKQPLLVALSYSVQIMDEGVIPVTPNDVPVDALVSPAGVIPITTAAQERCH* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5826969 5832055 + Vvi17g470 Vvi17g470 779167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g470 242 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 5 241 - -
Vvi17g470 242 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 5 241 - -
Vvi17g470 242 Gene3D - 12 230 IPR024185 -
Vvi17g470 242 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 20 226 IPR002698 -
Vvi17g470 242 SUPERFAMILY NagB/RpiA/CoA transferase-like 19 233 IPR037171 -
Vvi17g470 242 PIRSF 5_FTHF 15 230 IPR002698 -
Vvi17g470 242 Pfam 5-formyltetrahydrofolate cyclo-ligase family 20 227 IPR002698 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g470 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - vvi:100241674 473.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g811 Vvi17g470 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g470 . . Bda06g00567 . . . . . . . Cma10g00162 . Car10g00153 Car11g00125 Sed08g0182 . Cpe04g01527 Bhi02g00377 Tan09g2182 Cmetu02g0955 . Hepe09g0156 . . Cla06g01624 Cam06g1805 Cec06g1856 Cco06g1862 Clacu06g1765 Cmu06g1709 Cre06g2527 . . . Cone19ag0105 . . . . . Blo15g00287 . . Bpe07g00809 . . . . Cmo10g00173 . . . . . . Cpe18g00816 . . . . . . . . . . . . . . Lsi06g01505 Csa01g00194 Chy02g02538 Cme02g01922
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36