Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g472 ATGGATCCTCCACTCATCAATGAGTCTTCCTTCTCTGCGGCCAATCCCTCCGCCTACTCACTAGCTGAGATTTGGCCTTTTCCCGTCAACTCTGCCTCTGCAATTGGGGAACCCACTGCCGGGTTGGATAGCTCTGCAAATCGTGACGTGTCTGTTGATGAATCGACTGTGACGGAGCAGAGTGGGAGTCGTGGCGGTGGAAGGAAGAGGAGGGATGTGAGTTCGGAGGATGAGTCTTCCAAGATTGTTTCTACTAGTAGTGGCAGTGGCATGAATGCATCGAATGGTAAACGTATGAAAATATCAAGAACTCCTGATGAAAATGGTGGTTCAAAAGCAGAATTAGAAGCTAGTTCAGTGGCTGGTGAAAAGCCCGCTGAAGAATCTAAACCTGCTGAGCAGTCTAAGCAAGACTATATCCATGTGAGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTAGCAGAGCGAGCTAGGAGAGAAAAGATCAGTGAGAGGATGAAGATTCTTCAAGATTTGGTTCCTGGATGTAATAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATCAACTACATCCAGTCACTACAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTTGAAGCAGTTAATTCAAGGATGAACCATACTGTTGAAGGATTTCCTTTGAAAGATCTTGGGGTACAGACATTTGATGCTGCTGCAATGATATATGGATCACAAGCAACCAGGGAATATGCTCAAGGATCGCAACCTGAATGGCTACATATGCAGGTTGGTGGCAGTATTGAAAGAGCATCCTAG 810 45.68 MDPPLINESSFSAANPSAYSLAEIWPFPVNSASAIGEPTAGLDSSANRDVSVDESTVTEQSGSRGGGRKRRDVSSEDESSKIVSTSSGSGMNASNGKRMKISRTPDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNHTVEGFPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5834788 5839316 - Vvi17g472 Vvi17g472 779169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g472 269 SMART finulus 154 204 IPR011598 GO:0046983
Vvi17g472 269 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Vvi17g472 269 Gene3D - 145 221 IPR036638 GO:0046983
Vvi17g472 269 MobiDBLite consensus disorder prediction 79 99 - -
Vvi17g472 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 218 IPR036638 GO:0046983
Vvi17g472 269 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 268 - -
Vvi17g472 269 Coils Coil 195 215 - -
Vvi17g472 269 MobiDBLite consensus disorder prediction 121 138 - -
Vvi17g472 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Vvi17g472 269 MobiDBLite consensus disorder prediction 31 138 - -
Vvi17g472 269 MobiDBLite consensus disorder prediction 64 78 - -
Vvi17g472 269 CDD bHLH_AtBPE_like 138 223 - -
Vvi17g472 269 MobiDBLite consensus disorder prediction 37 63 - -
Vvi17g472 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 268 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g814 Vvi17g472 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14201 PF00010 HLH 2.10E-08 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g472 - - vvi:100256975 504.982