Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g483 ATGGGCGGAGACGACGGCGGTGGCGGCGGCTGTGGGGTTTCTCCGGAACTTGCCTCGCAGACGGAGGCGGAAGCGGCAGCGCAACCGCTAGAGCCGTTGTGCCGGTCGGTCTCCGGGGCCCAACTTCGGGACGCTCCGATTCTTCTCTTTGTGTTCTTCCACAAGGCTCTGCGTGCAGAGCTCGCAGAGCTACGGCGGTTGGCGGCGGCGGAGAGTGGGTGCCGCGGAGGCAGCAGTAACGGCAATCTGGTCGTCGAAATCCGCCGGCGGTTCGAGTTTTTGAAGCTTTTTTATAAGTATCATAGTGCTGCGGAGGATGAGGTGATCTTTCTAGCACTAGATGTGCACATAAAAAATGTGGCACATACATATTCACTTGAACATAAAAGCATAGATGATCTCTTCAGCTCTATTTTTCATTGCTTGGATGTTTTAATGGAAGGTGATGCAAATACTGCCAAGCCATTTCAAGAACTCGTACTTTTAATCAGCACAATTCAAACCACCATTTGCCATCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTTTGCTTATGAAGCAATTCTCTCCCCAAGAACAGGCTTCTCTTGTTTGGCAGTTTATGTGTAGTGTTCCTGTACTCCTGCTGGAGGATTTCTTACCATGGATGACTTCTTTTCTTTCTCCAGAGGAACAAGTGAATGTAGTGAATTGTATAAAAGAAGTTGTACCTGAGGAAAAACTGCTGGAAGAGGTGGTAATCTCCTGGCTTGGTAACAATAACCAACCTTTTGGATCCCCCACTAGAATTGGAGAAGAAGCTCAAAGTGTTGGACCTGCAAATTTGAAGGATGCACTGAAAGTGTATTCATCTAAGAGTTTTTCTACAGAAATTCGGCAATGGAAGGAAGTGTTTGGTCTCAAGACCAATGTTGGACAAAATCCAGTTGATGGCCTTCATCTTTGGCATGGTGCCATTAGGAAAGATTTGAAAGGAATTTTGGAGGAGCTATATCAAATAAGAAGCTCAGACAGTTTCTCAACATTAGCTTCAGTTATTGTCCAGCTAAAATTTCTTGCAGATGTTCTTATCTTCTATAGCAATGCATTGGATAAAATATTTTATCCTCTGTTAGATCTGCTTTCCGATGGCTGCCTCTCTCCCTCCTACAAACGATTTCCAGATGAAAGTCAAATTGAAGGTCTACAGAGATTGTTACACTATAATGCTAAAAATGGGATCCCTTTGTCCAAGTTTGTGGAGAAGCTTTGTTGGGAACTGGAGTCTTTTGTTATGGGGATTGGTGACCACTTGGTTTTTCAAGAAATGGAGGTATTTCCCCTTATTAGCGCAAAGTGCAGCCATGAACTGCAGAAGTGGCTACTGTACATGAGCCTTCTTATGATGCCACTTGGATTGCTGAAATGTGTAATTACCTGGTTCTTGGCTCATTTATCTGAGGAAGAATCCAAGTCTATTCTGAAAAGCATAAAGCAGGAAGATTCTTTAGTCAATATGTCCTTTGCATCCCTCTTGCATGAGTGGGTTCGCATTGGTTATTCAGGTAAAACCTCAGTGGAAAAATTCAGAAAGGACTTGCAGGAAATGTTCAAGAGCAGAAGCTCTTTTCACTCTGATCAAATTGAGGAAGATGGTCGATCTTTTTTCTCACCTTCAGATGCAAAACCTTGTGAAAGATCTAACCCTGGGCTGATGAAACCAATCCCTGGCAACAAGGCCACTCATTCTACCAGTGGACCTTATCTTTTTTTTCCACAAGGCCCTCAAAAAAGACCTGGAATTCCTTGTCTTTGGTTCAGCTAA 1806 43.96 MGGDDGGGGGCGVSPELASQTEAEAAAQPLEPLCRSVSGAQLRDAPILLFVFFHKALRAELAELRRLAAAESGCRGGSSNGNLVVEIRRRFEFLKLFYKYHSAAEDEVIFLALDVHIKNVAHTYSLEHKSIDDLFSSIFHCLDVLMEGDANTAKPFQELVLLISTIQTTICHHMLKEEEQVFPLLMKQFSPQEQASLVWQFMCSVPVLLLEDFLPWMTSFLSPEEQVNVVNCIKEVVPEEKLLEEVVISWLGNNNQPFGSPTRIGEEAQSVGPANLKDALKVYSSKSFSTEIRQWKEVFGLKTNVGQNPVDGLHLWHGAIRKDLKGILEELYQIRSSDSFSTLASVIVQLKFLADVLIFYSNALDKIFYPLLDLLSDGCLSPSYKRFPDESQIEGLQRLLHYNAKNGIPLSKFVEKLCWELESFVMGIGDHLVFQEMEVFPLISAKCSHELQKWLLYMSLLMMPLGLLKCVITWFLAHLSEEESKSILKSIKQEDSLVNMSFASLLHEWVRIGYSGKTSVEKFRKDLQEMFKSRSSFHSDQIEEDGRSFFSPSDAKPCERSNPGLMKPIPGNKATHSTSGPYLFFPQGPQKRPGIPCLWFS* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5968992 5974041 + Vvi17g483 Vvi17g483 779180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g483 601 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 37 556 - -
Vvi17g483 601 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 37 556 - -
Vvi17g483 601 CDD Hr-like 49 183 - -
Vvi17g483 601 Gene3D nmb1532 protein domain like 309 456 - -
Vvi17g483 601 Gene3D nmb1532 protein domain like 45 203 - -
Vvi17g483 601 MobiDBLite consensus disorder prediction 538 572 - -
Vvi17g483 601 Pfam Hemerythrin HHE cation binding domain 52 185 IPR012312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g483 K16276 K16276, BTS; zinc finger protein-like protein - vvi:100267228 1111.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34