Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g484 ATGAGTCAGGACGATTTGGAAGCTGCAATAAGAAGAGTATCCCGTGATTCTTCTTTAGATCCTCAAAAGAAATCACATATAATCCAGAACCTGCTAATGAGTCGCTGGATTGTCAGACAACAAAAATCTCATTCAGAAGTTGCTGTCTTGGGTAGTGGGAAAGAAATTCCAGGTCAATGTCCATCTTATCGGGACCCTCTCAAACTAACTTTTGGTTGCAAACATTACAAGAGGAACTGTAAGCTTGTTGCAGCCTGCTGCAACCAGCTTTATGCATGCAGACTTTGCCATGATGATGTGACTGATCATTCAATGGATAGGAAAAAAACTACAAAGATGATGTGCATGAGATGCTTGGTAATTCAACCAGTTGGTCCAACATGCTCTACTGCTTCTTGTGATAATTTATCTATGGCAAAATACTATTGCAGGATCTGCAAATTTTTTGATGATGAAAGGGAAATCTACCACTGCCCTTACTGTAACCTATGCCGAGTTGGGAAGGGATTGGGAATTGACTATTTTCATTGTATGAATTGCAATGCTTGTATGTCGCGATCTCTTTCTGTGCATATATGTAGAGAGAAGTGGATGGAGGATAATTGCCCTATTTGCCATGAATTCATCTTCACCTCAAGCTCTCCAGTTAAGGCTCTACCATGTGGTCATTTGATGCACTCAGCATGTTTTCAGGACTACACTTGTACTCATTATACCTGCCCAATCTGTAGCAAGTCACTTGGGGATATGCAGGTTTATTTTGGGATGTTAGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTACGCAGACTCAGATGATCCTGTGCAATGATTGTGAGAAGAGAGGAACTGCTGCTTTCCATTGGCTTTATCACAAGTGCCCTTATTGTGGTTCATACAACACAAGGGTTATATGA 927 40.78 MSQDDLEAAIRRVSRDSSLDPQKKSHIIQNLLMSRWIVRQQKSHSEVAVLGSGKEIPGQCPSYRDPLKLTFGCKHYKRNCKLVAACCNQLYACRLCHDDVTDHSMDRKKTTKMMCMRCLVIQPVGPTCSTASCDNLSMAKYYCRICKFFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLSVHICREKWMEDNCPICHEFIFTSSSPVKALPCGHLMHSACFQDYTCTHYTCPICSKSLGDMQVYFGMLDALLAEEKIPDEYSTQTQMILCNDCEKRGTAAFHWLYHKCPYCGSYNTRVI* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5974171 5981322 + Vvi17g484 Vvi17g484 779181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g484 308 SUPERFAMILY RING/U-box 189 248 - -
Vvi17g484 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Vvi17g484 308 SMART ring_2 202 243 IPR001841 -
Vvi17g484 308 Pfam Zinc-ribbon 249 306 IPR039512 -
Vvi17g484 308 ProSiteProfiles Zinc finger CTCHY-type profile. 138 201 IPR017921 -
Vvi17g484 308 CDD RING-H2_Pirh2 201 244 - -
Vvi17g484 308 Pfam CHY zinc finger 73 148 IPR008913 GO:0008270
Vvi17g484 308 ProSiteProfiles Zinc finger RING-type profile. 202 244 IPR001841 -
Vvi17g484 308 SUPERFAMILY Zinc hairpin stack 139 193 IPR037275 -
Vvi17g484 308 Pfam Ring finger domain 200 243 IPR001841 -
Vvi17g484 308 ProSiteProfiles Zinc finger CHY-type profile. 66 135 IPR008913 GO:0008270
Vvi17g484 308 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 308 - -
Vvi17g484 308 SUPERFAMILY CHY zinc finger-like 65 129 IPR037274 GO:0008270
Vvi17g484 308 Gene3D - 272 308 - -
Vvi17g484 308 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 308 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g484 K16276 - vvi:100267228 674.47