Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g485 ATGACCCTTAAAGGTGGGACTAGCCAAGCATGCGCTGCCTGCAAGTACCAGAGGAGGAAGTGCTCCTCTGAGTGTCCTCTTGCCCCTTACTTCCCTCCTGATCAGCCCAAAATGTTTGCCGACGCTCACAGGCTCTTTGGTGTCAGCAACATCCTTAAAATTCTCAAGCAATTGGACCCCACCCAGAAACTCACCGCCATGCAGTCCATCATCTACCAGGCCACCATCCGTGAGCGCTATCCGGTTAGCGGCTGCTTGGGTTTGATTTGCCAACTCCATTACCAAATCCGCCAGACCGAGGACGAGCTTCATGTTGTCCTTTCACAGCTTGAAATCTGCCGCCAGCACCACCACCAACAGATACAGATGGCCTCTGCACCCAGTGATTCCTCCTCTTCCCCCTTGGAGCTAGGCTGCAGTGCCCTCTCTCTCCATCATAACCCTCCTCCTCCTCCTCCGGAATACAACGCTGTTTCTGTTGCTGGCGGTGGTGATGGTGGTCTGCCTGTTGGAGTTGGAACCCATCACCCATATTCTCCTACGACCAATGCGCCTTTCAATTTTGATTTCCTTGATCCCAAAGACAATTCTCTGAATCCTGTGTGGCCTCAGAATTCATTCAGTATCACCAACAACAATGATGTTCACAATTCCTTGACAATCCAGCCTCAACCCGTTGCCACACAGCCCTTACCCCTCCAACCCCAGGCTGCCCAGGATTATGATGAGATACATCCATTCTTCGATACTTTTGACGACAGACAGTCATACGTAGATTCCAAAGAGGCTTATGAATCAAGCTCGGAATCATCCTTCAAAGATGCCACCCAGTCCACTGACAATGTTGCTGAGAATGAATTGAAAAGCGCTGCGGCATGCTTCAGTCTCATCAGTCTCGGCCAATGA 906 50.88 MTLKGGTSQACAACKYQRRKCSSECPLAPYFPPDQPKMFADAHRLFGVSNILKILKQLDPTQKLTAMQSIIYQATIRERYPVSGCLGLICQLHYQIRQTEDELHVVLSQLEICRQHHHQQIQMASAPSDSSSSPLELGCSALSLHHNPPPPPPEYNAVSVAGGGDGGLPVGVGTHHPYSPTTNAPFNFDFLDPKDNSLNPVWPQNSFSITNNNDVHNSLTIQPQPVATQPLPLQPQAAQDYDEIHPFFDTFDDRQSYVDSKEAYESSSESSFKDATQSTDNVAENELKSAAACFSLISLGQ* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5986033 5987215 - Vvi17g485 Vvi17g485 779182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g485 301 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Vvi17g485 301 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi17g485 301 MobiDBLite consensus disorder prediction 121 138 - -
Vvi17g485 301 MobiDBLite consensus disorder prediction 121 152 - -
Vvi17g485 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 284 - -
Vvi17g485 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g485 - - - vvi:100262064 548.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1464 Vvi17g485 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g485 . . Bda06g00557 Bda15g00586 Bpe12g00562 . . Bma12g01009 . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0868 . Cone13ag0095 Cone19ag0098 . . . . Blo13g00027 Blo15g00256 . . Bpe07g00799 . . Bma08g00200 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006247 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 0 1 4 1 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14204 PF03195 LOB 6.10E-36 No_clan Vvi TF