Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g486 ATGGTAACGGGGGTCGAATCGGAGGGTTCGGCTTACTCTGCGATCAAACTGGAATGCGAGCGGTCGCTGACCGCCCTCCGCCGGGGGAACCACAACAAAGCCCTAAGAATCATGAAGGAGTTGAGTGTTCGCCACGACAACTCTGTGCACTCGGCGTTGATTCACCGAGTTCAGGGGACTGTGTGTGTGAAGGTAGCGTCGATTATTGATGATCCCAATGCGAAGCAGCGGCATTTGAAGAATGCCATTGAGACTGCTAAGAAAGCGGTGGAGCTGTCACCGAATTCCATTGAGTTTGCTCATTTTTATGCCAATTTGCTCTATGAGGCAGCGAGTGAGGGGAAGGAGTATGAAGAGGTGGTGCATGAGTGTGAACGGGCATTGTCTATTGACAGTCCGGTTGATCCTGCAAAGGAAAGCTTGCAGGATGAGAGCCAGCAGAAGATATCAACAGTGGAAGCACGGATTGGGCATGTGCAGAATGAGTTGCGGTCTCTTATTCAGAAATCGAACATTGCATCAATTTCGACTTGGATGAAGAATCTTGGAAATGGGGAGGAGAAGTTTAGGTTGATTCCAATAAGGAGGGTTTCGGAAGACCCCATGGAGGTGAGGTTGGTGCAAAGTAAGCGGCCTAATGAGATCAAGAAGGCAACTAAGACACAGGAAGAACGGAGGAAGGAGATTGAAGTCCGGGTGGCTGCAGCTAGGTTATTGCAGCAGAAGTCAGATGCGCCTCAATCACAAAGTGAGGGAGATAGGACTGATAAGGCATCAGAAACATCTTCAGGACCTGGTCAGAGAGTGGGAGAGCGACGGAAGAATGCCCGGAAATTTGGGTCTACAGTGGAAAGAAAGGTTAGGGTTAGGTCATATTGGAATTCAATGAGTTTCAATATGAGGAAAGATTTGCTTAAAATCAGGATTAGCGATCTTAAGGCCCATTTTAGTTCAGTGAAGGATGGCTTGGCAAGTGGAGTGTTATCGGAAGCTTTGTCTTTTGTAGAAGTGAATAAAGTGTGGAAGTTTTGGGTTTGCTGCCGTTGTGGTGAGAAATTTAAAGATTCAGAATTGCACATGCAGCATGTTGTGCAGGAGCACATGGGGAACCTCTTACCCAAAATGCAGTCTGTTTTGCCCCAAAACATTGACAATGAGTGGATTGAGATGATTGTTAATTGTTCTTGGAAACCACTGGATATCTCTGCTGCAGTTAAAATGCTGAAAAATGAATCAAAATATGCATGGGAATCTTCCCCTGAAAAGGGGATGTTAGGCGATGGTTGCAGTTGTGGAAACTTGGTGAAGAGTGACTCTGATAAGATTCCAAACCAGGGTAGCAGAGAATGTGATGGGAATGAGGGGTCCAAGGCATACTTGCTTGCCAATAGCTGGCCACTAGCTGATGATTCTGAGCGTGCTAAACTACTTGAAAAGATTCATGTGTTGTTTGAGATGCTTATTAAACATAAGTGTCTAGCTGGGAGCCATCTTAGCAAGGTGATGCAATTTACAACGGATGAGCTGCAGGGTATTGCTTCTGGTTCTCAGCTTCTAAACTATGGTGTGGACCAAACACCTACGTGCATATGCTTTTTGGGAGCTTCCCAACTCAGGAAACTGCTTAAATTCTTGCAGGAGCTTTCTCATGCTTGTGGTTTAGCTAGATCTTCGGATAAAACAAGCAGTGCCATGGATGATGCAAATAGTCTCAATCGGGATTTTGATATCAAAGAGAATGTTCTCCTAAATGGAGATGCTTCATGCCTTCTTTTGGATGAGCATTTACTGCCAACCGAAAATACCTCCACTGCAAGTTCTTTGTTGTCCTGGATATTTACAGGTCCCTCAAGTGTGGAACAGTTGGCATCATGGATGCGTATAAGAGAGGAGAAATCCAATCAAGGAATGGAGATTTTACAGATGCTGGAGAAGGAATTTTACCACCTGCAGAGCTTGTGCGAGAGAAAATGTGAGCATTTAAGCTACGAGGAAGCATTGCAAGCTGTGGAAGATCTGTGTCTTGAAGAAGGTAAAAAGAGGGAGAATGTCACTGACTTTGGTAGTCGAAGCCTTGAGTCTGTCTTAAGGAAGCGACGTGAAGAACTTAGGGAGAGTGAGAATGAAGTCATGCTCATCAGCAATAGATTTGAGTTAGATGCCGTAATAAATGTTTTAAAAGAAGCAGAATCTTTGAATATGAATCAGTTTGGATATGAGGAACATTACAATGGTGTTACCTCTCATCTTTGTGACTTGGAATCTGGTGAGGATGATGATTGGAGATCAAAGGACTTTCTGCATCAAATGGATGCTTGCATAGAAGTTGCTATTCAGAGACAGAAAGAACAGTTATCTGTTGAGCTGAGCAAAATTGATGCAAGAATCATGCGAAATGTTACTGGGATGCAGCAGTTAGAGCTTACTCTTGAGCCTGTGTCTGCCTTTGATTATCGGTCCATAATATTGCCTCTATTGAAATCATTCATGCGGGCACACTTGGAGGATCTGGCTGAGAAAGATGCCACACAGAAATCTGATGCTGCAAGGGAAGCATTTTTAGCAGAACTTGCACTTGATTCCAAAAAGAGTGCCATTGGGGGAAGTGATAATTCAAGACATAACCATGACAAGACAAAAGAAAAGAAAAAAGGCAAAGAGTATAGGAAAATGAAGGATTCAAAGGGTACTGGTGGTAGCGAGCAGCACGTTCTTCATCATGTGACAACTGAACAGGATTCTAGTCCAGTTGCATCTGATGGTGAACATCCAGACTCTGAGCCTGTTGTTTCCGTGAATGATGACAATTCAAAACATCAAGAAGAGGAACTTAGACGAAAGATTGAGCTTGAAGCAGAGGAAAGGAAACTTGAAGAAACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAGAAGCACCTGGCTGAGCAACGTAAGAAAACAACTGGAATAATTCCAGAGAAGGTGGTGACAGGATTTTCTGGTGGTTACTTAAATCCTAGTGCTGATGAGCATGATGCACATGAACAATTGGAACATTTTAAGCAGAAGAGCCAGTTCCCAAACAGTTTTGATGGCATGCCTAGGGATGTTATGGATGGTACTACAGTGCTGATTGACTCAATTACTAGTTCTGCTAATCAGAGGCTTAGAAGCACTCCCAGTCAGTATCATGCAAAAGTTGAACAAGGCTTACCTAATGGTGGAAGTCCAGTGGATGGTGTTTTGCTTTCTGAGCGGCGGATAGGAAGAAAAACTAAACGGCAAAAGAATTCCACCAAATTGATCGATGGGAAGTATCAGGCTGTATCATCTGGAAAGGAAAACGTTGAAGTGGGGATTTCACATATTGAAGATCGCGTCAAAGAGCAAATTAAAATTCATGGCAGTGGAGTTAATCTTCATTTGGGAGACAATGGAACAAAGACATTAAGACAGTTACAAGCAGAGGAGGATGATGAGGAAAGATTCCAAGCAGACCTTAAACAAGCCGTACGTCAAAGCCTTGATGCATATCAAGCACATCAGAAACTACCCCTGGTTTCAAGTTTAAGAATGCCACAAAGGATGTCTCATGAAGTGGATGATGTTGGTCTTTCACCAGATGACGTGGTAATTAAAAATATGTCTGGAGCAGATATGTTGGGTACTGGGCTGAAGAATGAAGTGGGTGAATACAATTGTTTTCTGAATGTAATCATACAGTCTTTGTGGCATTTAAGACGATTTCGAAATGAGTTCTTGGGGAGATCAACATCAGAGCATGTTCACGTCGGAGATCCTTGCGTTGTGTGTGCATTATATGAAATTTTCACTGCCCTGAGCGTAGCATCTACAGATACACGACGAGAAGCAGTTGCCCCTTCTGCTCTGAGGATTGCTCTAAGCAATCTATATCCAGATAGTAATTTTTTCCAGGAGGCACAGATGAATGATGCTTCTGAAGTGCTGGGAGTAATATTTGACTGCCTTCATCGGTCATTCACTTCTTCTTCCAGTATTTCTGATACTGAATCAGTGGAAAGCAATTGCATGGGGTCTTGGGATTGTGCAAACAGCATTTGTCTTGCACATTCTCTTTTTGGAATGGACATTTTTGAGCGAATGAATTGCTACAATTGTAGTTTAGAGTCTAGGCATCTAAAGTACACTTCCTTCTTTCATAATATCAATGCCAGTGCACTGCGAACAATGAAGGTTATGTGTGCAGAAAGCTCCTTTGATGAGCTATTGAATCTCGTAGAAATGAATCACCAGTTAGCTTGTGATCCTGAGGCTGGTGGCTGTGGGAAGTTCAACTATATCCATCATATTCTCTCAACTCCACCACATGTTTTTACAATAGTTTTGGGTTGGCAGAATACATGTGAGAGTGCTGATGACATAACAGCAACATTAGCAGCACTGAATACTGAGATAGATGTCAGTGTCCTTTATCGTGGTCTAGATCCAAAGAACCGATATTGCTTGGTTTCAGTGGTATGCTATTATGGGCAACATTATCATTGCTTTGCCTATAGTCATGAGCATGAACGGTGGGTTATGTATGATGATAAAACAGTCAAGGTAATTGGTAGCTGGGACAATGTTCTTACCATGTGTGAAAGAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4659 42.91 MVTGVESEGSAYSAIKLECERSLTALRRGNHNKALRIMKELSVRHDNSVHSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIETAKKAVELSPNSIEFAHFYANLLYEAASEGKEYEEVVHECERALSIDSPVDPAKESLQDESQQKISTVEARIGHVQNELRSLIQKSNIASISTWMKNLGNGEEKFRLIPIRRVSEDPMEVRLVQSKRPNEIKKATKTQEERRKEIEVRVAAARLLQQKSDAPQSQSEGDRTDKASETSSGPGQRVGERRKNARKFGSTVERKVRVRSYWNSMSFNMRKDLLKIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQEHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKMLKNESKYAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYLLANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLNYGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKENVLLNGDASCLLLDEHLLPTENTSTASSLLSWIFTGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDLCLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLNMNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEVAIQRQKEQLSVELSKIDARIMRNVTGMQQLELTLEPVSAFDYRSIILPLLKSFMRAHLEDLAEKDATQKSDAAREAFLAELALDSKKSAIGGSDNSRHNHDKTKEKKKGKEYRKMKDSKGTGGSEQHVLHHVTTEQDSSPVASDGEHPDSEPVVSVNDDNSKHQEEELRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQRKKTTGIIPEKVVTGFSGGYLNPSADEHDAHEQLEHFKQKSQFPNSFDGMPRDVMDGTTVLIDSITSSANQRLRSTPSQYHAKVEQGLPNGGSPVDGVLLSERRIGRKTKRQKNSTKLIDGKYQAVSSGKENVEVGISHIEDRVKEQIKIHGSGVNLHLGDNGTKTLRQLQAEEDDEERFQADLKQAVRQSLDAYQAHQKLPLVSSLRMPQRMSHEVDDVGLSPDDVVIKNMSGADMLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRNEFLGRSTSEHVHVGDPCVVCALYEIFTALSVASTDTRREAVAPSALRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHRSFTSSSSISDTESVESNCMGSWDCANSICLAHSLFGMDIFERMNCYNCSLESRHLKYTSFFHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDPEAGGCGKFNYIHHILSTPPHVFTIVLGWQNTCESADDITATLAALNTEIDVSVLYRGLDPKNRYCLVSVVCYYGQHYHCFAYSHEHERWVMYDDKTVKVIGSWDNVLTMCERGHLQPQVLFFEAVN* 1553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5988669 5999848 - Vvi17g486 Vvi17g486 779183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g486 1552 SUPERFAMILY Cysteine proteinases 1219 1549 IPR038765 -
Vvi17g486 1552 Pfam Ubiquitin carboxyl-terminal hydrolase 1220 1547 IPR001394 GO:0004843|GO:0016579
Vvi17g486 1552 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 415 600 - -
Vvi17g486 1552 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 7 411 - -
Vvi17g486 1552 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 606 1552 - -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 240 277 - -
Vvi17g486 1552 PANTHER UBIQUITIN SPECIFIC PROTEINASE 415 600 - -
Vvi17g486 1552 PANTHER UBIQUITIN SPECIFIC PROTEINASE 606 1552 - -
Vvi17g486 1552 PANTHER UBIQUITIN SPECIFIC PROTEINASE 7 411 - -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 867 900 - -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 903 919 - -
Vvi17g486 1552 Coils Coil 940 970 - -
Vvi17g486 1552 Coils Coil 1149 1169 - -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 927 943 - -
Vvi17g486 1552 CDD Peptidase_C19 1310 1549 - -
Vvi17g486 1552 Pfam Protein of unknown function (DUF627) 23 131 IPR006866 -
Vvi17g486 1552 Pfam Protein of unknown function (DUF629) 288 776 IPR006865 -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 864 943 - -
Vvi17g486 1552 MobiDBLite consensus disorder prediction 208 227 - -
Vvi17g486 1552 Coils Coil 689 716 - -
Vvi17g486 1552 Gene3D Tetratricopeptide repeat domain 14 164 IPR011990 GO:0005515
Vvi17g486 1552 Gene3D Cysteine proteinases 1209 1552 - -
Vvi17g486 1552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1219 1551 IPR028889 -
Vvi17g486 1552 ProSitePatterns Zinc finger C2H2 type domain signature. 346 367 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1467 Vvi17g486 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g486 - - vvi:100256959 2989.13