Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g493 ATGAGATGTGCCATAGGCTCATCCACACTCACACTCCATCAACTTTTACCAAATCTTCAACAGTTGCTGTGGATTAGAATAATTATTCATTTCCAAATCTTCCAGGAAGAGGCAATTCATCCTTATTCAGCAGAGGAGGACCCTCCTGAACACCCTCCTCCATCCCCTCCTCAAAAGACACCAGGAGGGTGGAAATCAGTAAAATACATTCTGGCACATGAGTCCTTTGAGAAGTCGGCTTCCACGACTGGTGCATTTGTCTCCGATGCTTATCTTGGCAGGTTTCACACGCTCCTCCTTGGCTCCATGGTCTCTTTTCTGGGGATGGGAACCATGAATCTAACAGCAGGTGTAACTGAAGTAAGACCATTCCCTTGCAATGGGCAAAGGAATTGCCCTCAGCCTTATGCCTGGCAGCTTGTCTTGCTTTATGGAGGGATGGGAACCATGACTCTAACAGCAGGTGTAACTGAAGTAAGACCATTCCCTTGCAATGGGCAAAGGAATTGCCCTCAGCCTTATGCCTGGCAGCTTGTCCTGCTTTATGGAGTTCTTGGGTTATTAGCCATAGGAGCAGGTGGCATCCGGACCTGCAGCATTGCCTTTGGGGCAGATCAATTTGATCCCACAACTGAAAAAGGAAGAGCACAACTCCAAAGCTTCTTCGATTGGTGGTACTTCTCATTCATCCTTGCTCTCGTGGTAGCCCTCAGTGTTGTGGTCTACATTCAGACCAATGTCAGCTGGGTTACTGGGTACTAG 762 47.9 MRCAIGSSTLTLHQLLPNLQQLLWIRIIIHFQIFQEEAIHPYSAEEDPPEHPPPSPPQKTPGGWKSVKYILAHESFEKSASTTGAFVSDAYLGRFHTLLLGSMVSFLGMGTMNLTAGVTEVRPFPCNGQRNCPQPYAWQLVLLYGGMGTMTLTAGVTEVRPFPCNGQRNCPQPYAWQLVLLYGVLGLLAIGAGGIRTCSIAFGADQFDPTTEKGRAQLQSFFDWWYFSFILALVVALSVVVYIQTNVSWVTGY* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6068417 6071094 - Vvi17g493 Vvi17g493 779190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g493 253 Pfam POT family 96 253 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi17g493 253 Gene3D MFS general substrate transporter like domains 145 253 IPR036259 -
Vvi17g493 253 PANTHER PROTEIN NRT1/ PTR FAMILY 2.8 146 253 - -
Vvi17g493 253 PANTHER PROTEIN NRT1/ PTR FAMILY 2.8 80 148 - -
Vvi17g493 253 MobiDBLite consensus disorder prediction 43 62 - -
Vvi17g493 253 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 146 253 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi17g493 253 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 80 148 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g493 - - - vri:117904118 283.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g841 Vvi17g493 ECH
Vvi14g1474 Vvi17g493 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g493 . . . . Bpe12g00559 . . . . . Cma10g00178 . Car10g00166 . . . . . . . . . . . . . . . . . . Cone2ag0862 Cone16ag0145 . . . . . . . . . . . . . . . Cmo10g00193 . . . . . . Cpe18g00806 . . . . . . . . . . . . . . . Csa01g00212 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002515 1 4 2 1 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 1 2 1 60