Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g494 ATGAAAATGGGGTTGTGGATTTGGTTTTTCTCTGCAATATTGGGAGGAACCCTTTTGGGCCCTTGCTGTCTTGCTCTCTCTGAAGATGGTGTTACATTGTTGGAAATCAAGAGCCGTTTGAATGACAGTAGAAATTTTCTCGGTAACTGGAGGGATTCTGATGAGTTTCCATGTAAATGGACTGGTGTCTCTTGCTATCACCATGATCATCGAGTTCGTTCTATAAACCTACCTTACATGCAACTCGGGGGGATTATATCTCCAAGCATAGGCAAACTCAATAAATTACAAAGACTGGCACTTCACCAAAACAGCTTGCATGGGTCTATTCCTAACGAGATTGCCAATTGTGCTGAGCTCAGAGCCCTGTACTTGAGGGCCAATTATCTTCAAGGAGGCATACCGTCAGACCTTGGAAATCTTTCATATCTCACTATACTGGATTTCTCAAGCAATTCATTAAAGGGTGCCATACCATCCTCACTGGGTCGCCTCAAACGGCTGCGCTATTTGAACTTGTCTACAAACTTCCTTTCTGGTGAAATCCCAGATGTTGGAGTCCTAAGCACTTTTGACAACAAGTCTTTTATTGGAAATTTGGATTTGTGTGGTCAACAAGTGCACAAGCCATGTCGGACCTCACTGGGATTCCCTGCAGTGCTGCCCCATGCTGAAAGTGATGAAGCTGCAGTCCCTGTTAAACGATCAGCTCATTTCACCAAAGGTGTGTTGATTGGTGCAATGTCTACTATGGCTCTTGTGCTTGTCATGCTTCTTGCATTCCTCTGGATTTGTTTCTTATCAAAGAAAGAAAGAGCTTCCAGGAAATATACCGAAGTTAAAAAGCAAGTTCATCAAGAACCAAGCACCAAGCTTATTACTTTCCATGGTGATCTTCCATATCCCTCGTGTGAGATCATAGAGAAGCTGGAAGCTCTTGATGAAGAGGATGTTGTGGGTTCAGGGGGATTTGGTACTGTATATCGAATGGTCATGAATGACTGTGGTACATTTGCTGTGAAAAGAATTGATCGGAGTCGTGAAGGATCTGATAAAGTATTTGAGAGGGAGTTGGAGATCTTGGGTAGCATAAAGCACATAAATCTAGTTAACCTGCGAGGTTACTGCAGGCTTCCCACTTCAAAGCTGCTTATATATGATTATTTGGCTTTGGGCAGCTTAGATGATTTTTTGCATGAACATGGTGGACAAGATGAGCGGTCCCTTAATTGGAGTGCTCGTTTAAACATAGCCCTGGGTTCTGCCCGGGGGTTGGCATATTTGCATCATGATTGCAGCCCAAGGATAGTTCATCGTGACATAAAATCCAGCAACATACTCCTTGATGAAAATTTAGAGCCTCACGTTTCTGACTTTGGTCTTGCCAAACTTTTGGTAGATGAGGATGCGCATATCACGACTGTCGTTGCTGGCACTTTTGGCTATTTGGCACCAGAGTATCTGCAAAGTGGAAGAGCAACAGAGAAATCAGATGTCTATAGCTTTGGAGTTCTTTTGTTAGAGCTTGTCACTGGAAAGAGGCCTACTGATCCAACTTTCGTCAAGAGAGGTTTAAATGTTGTTGGCTGGATGAACACCCTATTGAAAGAGAATCGGTTGGAGGATGTAGTAGATAAAAGGTGCAGAGACGCTGAAGTTGAAACTGTAGAAGCAATTCTTGATATAGCGGGAAGGTGCACCGATGCAAACCCAGACGATCGGCCATCAATGAGCCAGGTGTTGCAGCTGCTAGAGCAAGAAGTTATGTCACCATGCCCCAGTGATTTCTATGAGTCCCATTCAGACTACTGTTAA 1815 43.69 MKMGLWIWFFSAILGGTLLGPCCLALSEDGVTLLEIKSRLNDSRNFLGNWRDSDEFPCKWTGVSCYHHDHRVRSINLPYMQLGGIISPSIGKLNKLQRLALHQNSLHGSIPNEIANCAELRALYLRANYLQGGIPSDLGNLSYLTILDFSSNSLKGAIPSSLGRLKRLRYLNLSTNFLSGEIPDVGVLSTFDNKSFIGNLDLCGQQVHKPCRTSLGFPAVLPHAESDEAAVPVKRSAHFTKGVLIGAMSTMALVLVMLLAFLWICFLSKKERASRKYTEVKKQVHQEPSTKLITFHGDLPYPSCEIIEKLEALDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDKVFERELEILGSIKHINLVNLRGYCRLPTSKLLIYDYLALGSLDDFLHEHGGQDERSLNWSARLNIALGSARGLAYLHHDCSPRIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHITTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPTFVKRGLNVVGWMNTLLKENRLEDVVDKRCRDAEVETVEAILDIAGRCTDANPDDRPSMSQVLQLLEQEVMSPCPSDFYESHSDYC* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6076048 6081450 + Vvi17g494 Vvi17g494 779191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g494 604 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
Vvi17g494 604 Gene3D Phosphorylase Kinase; domain 1 272 388 - -
Vvi17g494 604 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vvi17g494 604 SUPERFAMILY L domain-like 25 202 - -
Vvi17g494 604 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vvi17g494 604 Gene3D Transferase(Phosphotransferase) domain 1 389 593 - -
Vvi17g494 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vvi17g494 604 Gene3D Ribonuclease Inhibitor 27 213 IPR032675 -
Vvi17g494 604 Pfam Protein kinase domain 315 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g494 604 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 596 - -
Vvi17g494 604 ProSiteProfiles Protein kinase domain profile. 313 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g494 604 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 36 596 - -
Vvi17g494 604 SMART serkin_6 313 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76321 PF00069 Pkinase 1.30E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g494 - - vvi:100253552 1211.82