Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g496 ATGAAGCTGGAGGGTAAAGTGGCGATCATAACCGGCGGTGCAAGCGGTATCGGCGAGGCGACGGCGCGTCGCTTTGCGGAGCATGGCGCACGCGCTGTCGTGATTGCTGACATTCAAGACGAGCAGGGCCAGCGAGTGGCCGAATCGATTGGGTTACATCGCTGCAGGTACATCCATTGTGATGTAACCGATGAGCAGCAGATCAAAGCCATGGTGGAATCAACGGTGCGTATGTACGGACAGCTTGACATAATGTTCAGCAACGCTGGAATGATGAGTAAAACCCTCACGACCATACTGGAGCTAGATCTATCAGATTACGACACGCTGTTTGCAGTGAACGCGAGGGGCATGGCAGCGTGTGTGAAGCACGCGGCGCGTGCGATGGTGGAGGGTGGAGTTAAAGGGAGCATAGTGTGCACGGCGAGCGTGACTGCGACGACGGGGAGTGACAAGTTTATTGACTACACGATGTCCAAGCACGCGGTGTTAGGGCTGATGAGATCAGCGAGTAAGCAGCTGGGCGCGTACGGAATAAGGGTGAATTGCGTGTCGCCGGCGGGAGTGGCCACTCCATTGGCATGCGATGCGGGTCAGATGGGAGTGGAGGAGACTGAGAATTATTTCGGACAGTTAATGGGTTTGAAAGGGAGGGGGGCGTTGAAAGTGAAACACGTGGCGGATGCCGTGTTGTTTCTTGCTTCCGACGATTCTGAGGGCGTTGAAAGTGAGACACATGGCAGATGTAGTGTTAAGTTGTGGGTAATCATGAGACAATGGTGTCTTTCTCTCTTTAGAATTGTGTCTCAATGGAAAGATGATGAAGCTCAAACAGTTGTTACACCTCACCAAAATTCCATGACAGACCCTACACCTTTTAACAAGAAGCTACAAGGTAAAGTGGCTATCATCACCGGCGGCGCAAGCGGCATCGGCGAGGCTACGGCACGTCTCTTCGCCGATCACGGCGCACGAGCCGTCGTTGTAGCCGACATCCAAGACGAGCTGGGCCGGTGGTGTTAA 1023 53.86 MKLEGKVAIITGGASGIGEATARRFAEHGARAVVIADIQDEQGQRVAESIGLHRCRYIHCDVTDEQQIKAMVESTVRMYGQLDIMFSNAGMMSKTLTTILELDLSDYDTLFAVNARGMAACVKHAARAMVEGGVKGSIVCTASVTATTGSDKFIDYTMSKHAVLGLMRSASKQLGAYGIRVNCVSPAGVATPLACDAGQMGVEETENYFGQLMGLKGRGALKVKHVADAVLFLASDDSEGVESETHGRCSVKLWVIMRQWCLSLFRIVSQWKDDEAQTVVTPHQNSMTDPTPFNKKLQGKVAIITGGASGIGEATARLFADHGARAVVVADIQDELGRWC* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6090060 6125149 + Vvi17g496 Vvi17g496 779193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g496 340 Gene3D - 1 249 - -
Vvi17g496 340 Pfam Enoyl-(Acyl carrier protein) reductase 12 245 - -
Vvi17g496 340 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 2 242 - -
Vvi17g496 340 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 295 338 - -
Vvi17g496 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 241 IPR036291 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 156 175 IPR002347 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 177 194 IPR002347 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 130 146 IPR002347 -
Vvi17g496 340 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Vvi17g496 340 Gene3D - 289 340 - -
Vvi17g496 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 295 335 IPR036291 -
Vvi17g496 340 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 242 - -
Vvi17g496 340 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 295 338 - -
Vvi17g496 340 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 143 171 IPR020904 GO:0016491
Vvi17g496 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Vvi17g496 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 IPR002347 -
Vvi17g496 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 IPR002347 -
Vvi17g496 340 Pfam short chain dehydrogenase 300 336 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g496 - - - vvi:100265615 382.104
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g496 . . . . . . . Bma12g01007 . . . . Car10g00168 . . . . . . . . . . . . . . . . . . . . Cone13ag0088 Cone19ag0091 . . . . . Blo15g00305 . . . . . . Sed08g2640 Cmo10g00197 . . . . . . . Bhi08g01181 Tan05g2690 Cmetu03g1526 . Hepe07g1730 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014675 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 4 0 1 1 0 0 0 1 3 19