Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g499 ATGCTTCAGAACCAAAGGGTCCCTTGTTCTTCTCAGCCTCTTGATGCTCTCTTCCTTTCTGCCTCTTCTCCTTCTTTTCTTGGTTCGAGATCCATGTTGAGCTTTGAAGATGTTCGTGCGGGAAAGAGACCCGATAATCCCTTCTTCTGCCAGTTTGATCATGATGAAAATGGAGACGAGGACTTGGATGAGTATTTCCACCAACCCGAAAAGAAAAGGCGACTTACAGCCGACCAAGTCCAGTTTCTCGAGAGGAATTTTGAGGTGGAGAACAAGCTTGAACCAGAAAGGAAAGTCCAGCTTGCAAAGGACCTTGGCTTACAGCCTCGGCAAGTTGCCATATGGTTTCAGAACCGCAGAGCGCGGTGGAAGACCAAACAGCTGGAGAAGGACTTTGGCGCCTTGCAAGCTAGCTATAACAGCCTTAAGGCTGAGTATGAAAACCTCCTAAAGGAGAAGGATGAACTAAAAACTGAGGTTATTCTCCTCACAGACAAACTGCTCGTCAAAGAGAAGGAGAGGGGAAACTTGGAGGTGTCTAATACTGACACCCTATCCCAAGAACTGCCTCAAGTGGTGGTTGCTGATTCGCCGGGCGATTCTTCTTATGTTTTTGAAGCTGACCAATCAGACGTGTCACAGGATGAAGAAGATAACTTCAGCAAAAGCCTGTTGCCTCCATCATACATCTTTCCAAAGCTTGAAGATGTTGATTACCCCGACCCTCCCACAAATCCTTGTAGTTTTGGATTCCCGGTTGAAGATCATGCCTTTTGGTCCTGGTCCTATTGA 792 46.84 MLQNQRVPCSSQPLDALFLSASSPSFLGSRSMLSFEDVRAGKRPDNPFFCQFDHDENGDEDLDEYFHQPEKKRRLTADQVQFLERNFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFGALQASYNSLKAEYENLLKEKDELKTEVILLTDKLLVKEKERGNLEVSNTDTLSQELPQVVVADSPGDSSYVFEADQSDVSQDEEDNFSKSLLPPSYIFPKLEDVDYPDPPTNPCSFGFPVEDHAFWSWSY* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6134095 6136429 - Vvi17g499 Vvi17g499 779196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g499 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 190 IPR045224 GO:0003700
Vvi17g499 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 197 263 IPR045224 GO:0003700
Vvi17g499 263 Coils Coil 132 166 - -
Vvi17g499 263 PANTHER LEUCINE ZIPPER, HOMEOBOX-ASSOCIATED, HOMEODOMAIN-LIKE, DNA REPAIR PROTEIN XRCC4-RELATED 197 263 - -
Vvi17g499 263 PANTHER LEUCINE ZIPPER, HOMEOBOX-ASSOCIATED, HOMEODOMAIN-LIKE, DNA REPAIR PROTEIN XRCC4-RELATED 1 190 - -
Vvi17g499 263 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vvi17g499 263 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Vvi17g499 263 CDD homeodomain 71 127 IPR001356 GO:0003677
Vvi17g499 263 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677
Vvi17g499 263 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677
Vvi17g499 263 Gene3D - 65 131 - -
Vvi17g499 263 Pfam Homeodomain 71 124 IPR001356 GO:0003677
Vvi17g499 263 SMART HOX_1 69 130 IPR001356 GO:0003677
Vvi17g499 263 Pfam Homeobox associated leucine zipper 126 167 IPR003106 GO:0006355|GO:0043565
Vvi17g499 263 SUPERFAMILY Homeodomain-like 52 128 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g499 - - - vvi:100260419 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g846 Vvi17g499 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14205 PF00046 Homeodomain 8.20E-17 CL0123 Vvi TF