Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g50 ATGGATCCTGTTGAAGTAGGCTTGGGTTGTGGAAGCGACACCGCACACCTTTCTTTATTGGGTTATAACCCAAGAATATATTACCGAGGCCGAGGTGCATTTGAGTCCATGGGTGCTGGATTAGCAATGTTACCTGGAGATATTGCATTCAAGTCAAACTTTGCAACTTTAGATGAGAAGACTGGAATAGTCACCAGTAGAAGGGCTGACAGGCACTTCGAAGAAGAAGGCCCCATCCTCTGTGCTGCACTGGATGGAATGAAGCTGCCATCTTTTCCTCAGTATGAAGTCAGAGTCAGGTATGCAACAGAGCATAGATGCGGAGTGGTTGTGAAAGGACCAAATTTGAGTGGAAATATATCAGGAACAGACCCATTAAAGGATAACCGTTTGCTTTTACAAGCTACAGCTCTAGATGATACTGATGAAGCAAAGCACACAGCTGCAGTTGTTAATGAATTGTCCAAGGAGATATCACGAATTCTTGTTTCTCACCCTTTGAACGCAAAGCGGGCAGCAGAAGGAAAGAACATTGCTAATGTTGTCCTTTTACGAGGTTGCGGTATTTGCATTGAGGTTCCTCCGTTTGAAAAGAAACATGGGCTATGGCCATGCATGGTAGCTCCCACTAAAATTATAGCTGGCCTGGGCTTATCACTTGGTATTGATATCCTAGAAGCTCCCGGAGCAACTGGAGACTATCGAACACTTCTAACTTCCAAAGCAACTGCCATAGCTAAAGCACTATCAGCTCCTTTGCAGTCTTGCCCTAGTGTTTTTGTACCAGGGGAGGATGAGCACAAACCTGGCCGATCGGATGGCTATGATTTTGGGTTTCTTCACATTAAGGCTATTGATGATGCAGGCCATGACAAGGCGAGCATTTTCAAAGTCAAAGCAATGGAAGCTGTAGACAGAGCTATAGGACAGCTGGCCAGGCTCCTCTGGCAGGCAGAATCAACTGGGAAATTTGAATACTATCTTTGTGTTACTGGAGACCATTCTACTCCAGTTGAATATGGAGATCACAGTTTTGAACCTGTTCCATTTGCAATTTGTCAGTTGAAAGACTTTGTTGATGCAATGGATCTAACAGAAGGTTTGGAAAAGATGGAAGAGAGAAGTAAACAAGCTTTCAATGGTGATTCGGTTTCAGAATTTACTGAAATAGCAGCTGCAAGGGGATGTCTTGGGCGATTCTCAGGGAGCGAGATGATGGGAATTATTAAGACATATCTTAAGCTAAAAGCATGA 1254 43.94 MDPVEVGLGCGSDTAHLSLLGYNPRIYYRGRGAFESMGAGLAMLPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMKLPSFPQYEVRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLLQATALDDTDEAKHTAAVVNELSKEISRILVSHPLNAKRAAEGKNIANVVLLRGCGICIEVPPFEKKHGLWPCMVAPTKIIAGLGLSLGIDILEAPGATGDYRTLLTSKATAIAKALSAPLQSCPSVFVPGEDEHKPGRSDGYDFGFLHIKAIDDAGHDKASIFKVKAMEAVDRAIGQLARLLWQAESTGKFEYYLCVTGDHSTPVEYGDHSFEPVPFAICQLKDFVDAMDLTEGLEKMEERSKQAFNGDSVSEFTEIAAARGCLGRFSGSEMMGIIKTYLKLKA* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 433720 440709 + Vvi17g50 Vvi17g50 778747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g50 417 Gene3D Alkaline Phosphatase, subunit A 134 416 IPR017850 -
Vvi17g50 417 PANTHER BNAA06G39690D PROTEIN 1 363 - -
Vvi17g50 417 PANTHER BNAA06G39690D PROTEIN 376 416 - -
Vvi17g50 417 CDD iPGM_like 1 413 IPR004456 GO:0003824|GO:0046537
Vvi17g50 417 SUPERFAMILY Alkaline phosphatase-like 7 353 IPR017850 -
Vvi17g50 417 PIRSF IPGAM_arch 1 417 IPR004456 GO:0003824|GO:0046537
Vvi17g50 417 Gene3D Metalloenzyme domain 30 133 IPR042253 -
Vvi17g50 417 Pfam Metalloenzyme superfamily 169 355 IPR006124 GO:0003824|GO:0046872
Vvi17g50 417 PANTHER COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE 376 416 IPR004456 GO:0003824|GO:0046537
Vvi17g50 417 PANTHER COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE 1 363 IPR004456 GO:0003824|GO:0046537
Vvi17g50 417 Pfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 168 IPR004456 GO:0003824|GO:0046537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g50 - - - vvi:100242333 821.617
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g50 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007629 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 3 2 36