Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g502 ATGGCTTTTCCACGCTCAACTTGTTTGCTTCTACTCTTGGCTTCATTTTTGCTAACTCCATTGGAAGGTCATACTTTTAATGTCATGGACTATGGTGCAATTGGAAATGGCAGAACCGATGACAGTGAAGCTTTCATGAAAGCTTGGAGTGATGTGTGCAAGGCTTCAGCTTCTCCAACGTTTCTTGTTCCTGGAGACAGAAGGTTTTTGATCAATCCCGTCGTCTTCGAGGGCCGCTGTAGGTCCAAAAAAATTAAGTTCAAGGTAGATGGGACTATAACGGCGCCAAGTGAACCTTCAAAATGGAAATGCATTAATAAGCAATGCCATAGTTGGATCAGCTTTAAGCATGTAGATGGCCTTGTCATCTCTGATTGCATGTATTCCTTGACTAATTTACAGGCTTTGGTAGTAGCAAGATCCAACAATGTCCAATTACATGATCTAAGTTTCAAAGACAATCCCCACATGCATGTAGTCTTTCATCACTGCGACGGGGTGAAGATTTCACATATATCAATAGATGCACCTGAGGACAGTCCTAATACTGATGGTATTCACCTCAAAGAGACTGCCAGTGTCATCATAGAACATTGTACCATTGGCACTGGCGATGATTGCATTTCGCTGGTAGATGGATCAACTCATATTGACATGAGACACATTAAATGCGGTCCTGGGCATGGCATAAGCATTGGAAGCCTGGGAAAATTCGGACTGAGCGAGACAGTAGAATATATTCATGTTAAGGATGCTCAATTTACAGGGACAACAAATGGCGTTAGAATAAAGACATGGCAGGGAGGCCGAGGTCATGCAAGGAACATGATTTTTGAGAAAATCAGATCTTCCGATTCTGAATATCCTATCATCATTGATCAATTTTACTGTGATCATACAGAATGCCACGACAAACCTAATGCAGTGGAAATTCGCAATATCTCATACATTGATGTAAAGGGCACGTCAAAGAAGGAGACTGCAGTGAAGATTGCATGCAGTGACACAGTTCCATGCAGAGATATATTCATACAGAACATAAACTTGATCTATGATCAGTCAGGAAAGCAAGCCTCAGCTTACTGCAAAAATGTTATTAATGGATACTACCACGGAGTAGTCAGACCCAATATATCTTGCTTGCAGAACGACAAACTCCCGTAA 1164 41.58 MAFPRSTCLLLLLASFLLTPLEGHTFNVMDYGAIGNGRTDDSEAFMKAWSDVCKASASPTFLVPGDRRFLINPVVFEGRCRSKKIKFKVDGTITAPSEPSKWKCINKQCHSWISFKHVDGLVISDCMYSLTNLQALVVARSNNVQLHDLSFKDNPHMHVVFHHCDGVKISHISIDAPEDSPNTDGIHLKETASVIIEHCTIGTGDDCISLVDGSTHIDMRHIKCGPGHGISIGSLGKFGLSETVEYIHVKDAQFTGTTNGVRIKTWQGGRGHARNMIFEKIRSSDSEYPIIIDQFYCDHTECHDKPNAVEIRNISYIDVKGTSKKETAVKIACSDTVPCRDIFIQNINLIYDQSGKQASAYCKNVINGYYHGVVRPNISCLQNDKLP* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6151294 6153981 + Vvi17g502 Vvi17g502 779199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g502 387 Gene3D - 18 379 IPR012334 -
Vvi17g502 387 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 18 375 - -
Vvi17g502 387 PANTHER - 18 375 - -
Vvi17g502 387 ProSitePatterns Polygalacturonase active site. 221 234 IPR000743 GO:0004650|GO:0005975
Vvi17g502 387 Pfam Glycosyl hydrolases family 28 134 366 IPR000743 GO:0004650|GO:0005975
Vvi17g502 387 SUPERFAMILY Pectin lyase-like 12 381 IPR011050 -
Vvi17g502 387 SMART pbh1 164 190 IPR006626 -
Vvi17g502 387 SMART pbh1 244 265 IPR006626 -
Vvi17g502 387 SMART pbh1 191 212 IPR006626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g502 K01184 E3.2.1.15; polygalacturonase [EC:3.2.1.15] - vvi:104882408 768.459
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014177 0 1 1 0 0 1 0 1 1 2 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 0 2 23