Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g503 ATGGCGTCCCGTCTGGAAATTCTCTTCCTTGTATCTCTCTTTTCGGTTCTGCTAACCCCATTGCATTGTAGTGTTTTTGACGTAACCCAATATGGAGCAATTGGAAATGGCAGCACAGACGACAGTCCAGCTTTCATGCTTGCTTGGACTGATGTCTGCAACTCTTCAGCTTCTACTCCAATATTCCATATTCCTGGGAACAAAACCTTTTTGCTCAATCCTGTGTTCTTCCAGGGTCCTTGCAGGTCCACAAACATCCAGTTCCAGATAGATGGGATCATAACTGCTGAAAGTGAACCTTCAAACTGGAAATGTACAAGAAATAGATGCGATAAGTGGATTCATTTTAAGCGTGTGGATGGACTTTTCATCAATGGTTCCGGTATCATTGATGGCAATGGGAAGAATTGGTGGAGTTCAGGCTATATTAATGCTTTGGAAGTGACGAGCTCGAACAAGGTCCAATTGACCGGATTAAGTTTCAGAAACAATCCTCACATGCATGTAGTCTTTGATTCCTGCGACATGGTGCATATTTCAAATGTATCAATAGATGCACCCGGGGACAGTCCAAATACGGATGGTATTCACCTCAAAGAGAGCACCCATGTCAACATCGAGTTTTGCAGCATTAGAACTGGCGATGATTGCATATCAATAGTAGACAAGTGCTCCAACATCACCATTCAAAATATTGAATGTGGTCCTGGCCATGGCATAAGTATTGGAAGCATGGGGCAATATGGAGCATATGAGACCGTAGAAAATATTTACGTTAGCGATGTTCAATTTAAAGGGAGCTTGAGCGGTGTTCGGATCAAGACATGGCAGGGAGGCAAAGGTCATGCAAGGAAAATGGTCTTCAAGGGGATAACATCCTTAAACACCCAGTACCCTATCCAAATTGACCAATTTTACTGCCCCCATGCAAAATGCGATGAACAAGCTGATGCAGTGGAAATCAGCGATATCTCATATATTGATATAAAGGGGACATCAATGAGGAAGACAGCAGTGAAGTTAGCCTGCAGTGAATCAGTTCCATGCAAAAATATATTCATGCAGGACATAAACTTGAGTTACCAGGGGACTAATGCCTCAGCTTACTGTAAGAACGTTAATGGAACATCTCAAGGAATAATGGAACCTTCTGTTCCTTGCTTGTATTATCAGACATCGTAG 1182 42.55 MASRLEILFLVSLFSVLLTPLHCSVFDVTQYGAIGNGSTDDSPAFMLAWTDVCNSSASTPIFHIPGNKTFLLNPVFFQGPCRSTNIQFQIDGIITAESEPSNWKCTRNRCDKWIHFKRVDGLFINGSGIIDGNGKNWWSSGYINALEVTSSNKVQLTGLSFRNNPHMHVVFDSCDMVHISNVSIDAPGDSPNTDGIHLKESTHVNIEFCSIRTGDDCISIVDKCSNITIQNIECGPGHGISIGSMGQYGAYETVENIYVSDVQFKGSLSGVRIKTWQGGKGHARKMVFKGITSLNTQYPIQIDQFYCPHAKCDEQADAVEISDISYIDIKGTSMRKTAVKLACSESVPCKNIFMQDINLSYQGTNASAYCKNVNGTSQGIMEPSVPCLYYQTS* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6154648 6156718 + Vvi17g503 Vvi17g503 779200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g503 393 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 383 - -
Vvi17g503 393 SMART pbh1 224 244 IPR006626 -
Vvi17g503 393 SMART pbh1 201 222 IPR006626 -
Vvi17g503 393 SMART pbh1 174 200 IPR006626 -
Vvi17g503 393 SMART pbh1 254 275 IPR006626 -
Vvi17g503 393 Gene3D - 19 393 IPR012334 -
Vvi17g503 393 SUPERFAMILY Pectin lyase-like 14 390 IPR011050 -
Vvi17g503 393 PANTHER - 16 383 - -
Vvi17g503 393 Pfam Glycosyl hydrolases family 28 62 375 IPR000743 GO:0004650|GO:0005975
Vvi17g503 393 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g503 K01184 E3.2.1.15; polygalacturonase [EC:3.2.1.15] - vvi:104882408 485.337
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014177 0 1 1 0 0 1 0 1 1 2 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 0 2 23