Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g511 ATGGAAGCAGTTAACATGAGATTAGTAATTTTAATACCATTTTTGGTTATAGTTCCAGCCGTGACTGCCAACATAGGCGACTTCGATGAGGTGTGGCAAACTCGAGCGGAGGAAGCCAGAAAGGCCGCCCTCCAGGCCTATAACCCCCATCCAGAGAAAGTGACAGATAATTTCAACAAGAAGGTCCACAAGAGCTTTGATAGTACAAACCACACAAGGAGGAATTTGAGTAAATTTTCAGGACTATGCATGGCTACCAACCCAATCGACAGGTGCTGGAGATGCCGAAGTGACTGGGCTAGCAACCGCATGAAACTAGCTGATTGTGTGCTTGGGTTTGGGCAGAAGACAACTGGAGGCAAAGGTGGCAAAATTTATGTGGTGACGGATCCGTCTGACAATGACATGGTGAACCCCAAGCCCGGGACTTTACGTCATGCCGCGATCCAGGAGGAGCCACTTTGGATCATATTTGCCCATAGCATGGCAATCAGGCTAAATGAGGAGCTGATCATGACCAGTAATAAAACCATTGATGCCCGTGGAGCCAATGTGCACATTGCCAATGGTGCTGGCTTGACTCTGCACGATGGGGATGGTATATCGATTTTCGGGGCCACAAATATTTGGATTGATCATATTTCCATGTCGAATTGTGCTGATGGACTAATAGATGCCATCATGGCATCAACTGCTATTACCATCTCCAACTGCCATTTCACTCACCATAATGAGGTCATGTTGTTTGGTGCAAGCGACGGTTACTCCGGTGATGCAATCATGCAAATAACAATTACTTTCAACCACTTCGGCCAGGGGTTGACACAAAGGATGCCAAGATGCCGGTGGGGATTCTTCCATGTTGTCAACAATGACTACACACATTGGCTGATGTACGCCATAGGGGGTAGCCACCATCCTACCATACTCAGCCAGGGTAACCGATTCATCGCTCCTCCTGACATTAACTGTAAAGAGGTGACAAAGAGGGATTACTCACCTGAGAGTGTGTGGAAGAGTTGGACGTGGAGATCACAGGGGGATCTGATGATGAATGGGGCCTTCTTCGTTGAATCTGGAGACCCTAATTTTGATTTCTCAAACAAATATGTGATCAGGGCAAAACCTGGGGCATTTGTCACCAGGCTAACACGCTTTTCGGGTGCTCTTAGCTGCAGAGAAGGGATGCCATGTTAG 1197 47.45 MEAVNMRLVILIPFLVIVPAVTANIGDFDEVWQTRAEEARKAALQAYNPHPEKVTDNFNKKVHKSFDSTNHTRRNLSKFSGLCMATNPIDRCWRCRSDWASNRMKLADCVLGFGQKTTGGKGGKIYVVTDPSDNDMVNPKPGTLRHAAIQEEPLWIIFAHSMAIRLNEELIMTSNKTIDARGANVHIANGAGLTLHDGDGISIFGATNIWIDHISMSNCADGLIDAIMASTAITISNCHFTHHNEVMLFGASDGYSGDAIMQITITFNHFGQGLTQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHHPTILSQGNRFIAPPDINCKEVTKRDYSPESVWKSWTWRSQGDLMMNGAFFVESGDPNFDFSNKYVIRAKPGAFVTRLTRFSGALSCREGMPC* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6215991 6217587 + Vvi17g511 Vvi17g511 779208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g511 398 PANTHER PECTATE LYASE 18-RELATED 6 195 IPR045032 GO:0030570
Vvi17g511 398 PANTHER PECTATE LYASE 18-RELATED 197 398 IPR045032 GO:0030570
Vvi17g511 398 Pfam Pectate lyase, N terminus 24 76 IPR007524 GO:0030570
Vvi17g511 398 PANTHER PECTATE LYASE 197 398 - -
Vvi17g511 398 PANTHER PECTATE LYASE 6 195 - -
Vvi17g511 398 Gene3D - 86 391 IPR012334 -
Vvi17g511 398 SMART amb_all 161 322 IPR002022 -
Vvi17g511 398 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Vvi17g511 398 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Vvi17g511 398 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Vvi17g511 398 Pfam Pectate lyase 184 316 IPR002022 -
Vvi17g511 398 SUPERFAMILY Pectin lyase-like 87 389 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1485 Vvi17g511 ECH
Vvi1g856 Vvi17g511 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g511 K01728 - vvi:100267345 810.831