Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g516 ATGCATGCTGATGCAGCAAAAGTCAATGGTCTTCCATACGCCTTTTTTGAAAGGTGCCTATTTCTACTATCTTCCTGTACTCCATTCTCTCTCATTCCTTCAACAGTGAAGCAAATCTCTACATGTTCTTTCTCTCTTTTCTTCCTTTTTATCTCCTCTACAGCACCAGAATTATATAAGGAACTAAACAAAGGGAAGACACAAGGAACCCATTGCTTGGTTCTTTGTTCTTTTTTTTGGAGGGGTTTCTGCAGCGTCCATCTGGGCTTGGTGTACTTTTGTATGACGATTGAGCTGGCGAGGCAGAAGAGAAGAAAGGGGTCTATGAACAGCAGAAGCCGGAAACTAATGCTGAGTCCAGTTCAGCATCTGTATGAGACCTGCAGCGAAGTGTTTGCTGATGGAAAGGCTGGCTTTGTTCCGCCCCCGAAGGATATCGAGCGGCTGAGATCAGTTCTGGATAACCTGAAACCGGAGAATGTCGGCCTGTCAGCAGACATGCCATATTTCAGGGCAACTGGATCCGACGAAGTTCCTCCTCCAGTGACGTACCTACATATCTATGAATGTGATAAATTCTCGATTGGGATCTTCTGCTTGCCGCCATCTGGTGTTATTCCCCTTCATAATCATCCAGGCATGACTGTTTTCAGTAAGCTCCTCTTTGGGTCGATGCACATCAAATCATATGATTGGGTGGCCGATGTTTCGTACAGCAAGAACCAGAATACACACCATGAGGACTTGGCAGCACTCCAGCATGAACCCCGGTTAGCCAAGGTTCATGCTGACTCTGATCTGACTGCACCTTGCAAAACCTCAGTTCTCTATCCAAATGCAGGAGGCAATATGCACTGCTTCACAGCATTGACTCCATGTGCCATGTTAGATGTGCTGGGTCCACCCTACTCCGATGATGAAGGCCGCCACTGTACATACTACAATGATTTTCCTTATGCCACATTTTCAGGAGATACGGGATCATTACAAGCAGAGGAGATGGAAGGATGTGGGTGGCTTAAAGAAATGGAGAAACCCGAGAGCTTTGTCGTGGTTGGAGCAATGTATAGAGGCCCACAGTTTGTGGAGAATTGA 1095 46.39 MHADAAKVNGLPYAFFERCLFLLSSCTPFSLIPSTVKQISTCSFSLFFLFISSTAPELYKELNKGKTQGTHCLVLCSFFWRGFCSVHLGLVYFCMTIELARQKRRKGSMNSRSRKLMLSPVQHLYETCSEVFADGKAGFVPPPKDIERLRSVLDNLKPENVGLSADMPYFRATGSDEVPPPVTYLHIYECDKFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWVADVSYSKNQNTHHEDLAALQHEPRLAKVHADSDLTAPCKTSVLYPNAGGNMHCFTALTPCAMLDVLGPPYSDDEGRHCTYYNDFPYATFSGDTGSLQAEEMEGCGWLKEMEKPESFVVVGAMYRGPQFVEN* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6285645 6289773 + Vvi17g516 Vvi17g516 779213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g516 364 Gene3D Jelly Rolls 118 330 IPR014710 -
Vvi17g516 364 Pfam PCO_ADO 152 361 IPR012864 GO:0016702
Vvi17g516 364 PANTHER PLANT CYSTEINE OXIDASE 2 108 364 - -
Vvi17g516 364 PANTHER UNCHARACTERIZED 108 364 IPR012864 GO:0016702
Vvi17g516 364 CDD cupin_ADO 191 304 - -
Vvi17g516 364 SUPERFAMILY RmlC-like cupins 117 318 IPR011051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g516 K23953 PCO; plant cysteine oxidase [EC:1.13.11.-] - vvi:100260282 569.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1490 Vvi17g516 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001628 1 2 3 2 2 2 4 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 2 2 2 2 6 2 3 71