Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g517 ATGAGGGGTAGAGTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGGTTCTCAACCTGCTGAAGTACAAAATTTGGTGCAAGGCAAATGGACAGGATCTACTAGTGGGGAGACAATTGTGGATCCTTTAAATGGAGAACCATTCATCCAAGTTGCTGAGGTAGATGAAACAGGAATACAGCCATTTGTGGACAGCTTGTCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCTGCCCAAGGTTTCCGATTTCTTCACTAGGTTAATACAAAGAGTTGCTCCAAAGAGTTATCAACAGGCTCTTGGTGAAGTTTATGTTACACAAAAATTTCTGGAGAATTTTTCTGGTGATCAGGTTCGTTTCCTGGCGAGGTCTTTTGCAGTGCCAGGAAATCATCTTGGGCAGCAAAGTCATGGTTTTCGTTGGCCTTATGGTCCGGTGGCAATTGTTACACCCTTTAATTTCCCTTTGGAGATTCCTGTCCTTCAGTTGATGGGAGCCCTTTACATGGGCAACAAACCCATTCTTAAGGTTGATAGCAAGGTGAGTATTGTTATGGAGCAGATGATTCGATTGCTTCATCATTGTGGGTTGCCTATGGAGGATCTTGACTTTATAAATTCTGATGGAAAGACAATGAACAAACTATTATTGGAGGCAAATCCACGAATGACACTCTTTACTGGTAGTTCCAGAGTGGCAGATAAGTTAGCTGTTGACCTAAAGGGTCGGATTAAATTGGAAGATGCAGGATTTGACTGGAAAATTCTGGGACCAGATGTTCAAGAGGTGGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCATGCAGTGGACAAAAGTGCTCTGCGCAGTCAATAGTATTCATGCATGAGAACTGGTTTAAAAGTTCACTTATTTCCAGAATGAAAGATCTTGCTGCAAGAAGGAAGTTAGAAGATCTAACTATTGGACCTGTTCTGAGTTTTACAACTGAAGCAATGCTAGAACATATGAATAAGTTGCTTCAGATACCAGGATCAGAGCTACTATTTGGTGGCAAGGCTTTAGAAAATCATTCGATCCCTCCAATTTACGGTGCTCTAAAACCAACAGCCATTTATATTCCGCTTGAAGAAATGCTGAAGGATGGCAATTATGAGCTTGTTACAAGAGAGATTTTTGGACCATTCCAGGTTGTAACTGACTATAAAGACAATCAGCTACCCAGGGTGTTGGAAGCACTTGAGAGGATGCATGCACATTTAACTGCTGCGGTGGTTTCTAATGATTCCCTGTTTTTGCAGGAAGTGATTGGGAAATCAGTGAACGGGACTACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGCAATAAAGCTTGTTTGGTCGTGTCATAGAGAAATCATATATGATATTGGTCCCCTGCCAAGTCACTGGGAAATTCCACCAGCTACCTGA 1641 42.54 MRGRVPQIAALNWLGSLSLSRSIHNLPFATIEVEEISGSQPAEVQNLVQGKWTGSTSGETIVDPLNGEPFIQVAEVDETGIQPFVDSLSKCPKHGLHNPFKAPERYLMLGDISNKAAHMLSLPKVSDFFTRLIQRVAPKSYQQALGEVYVTQKFLENFSGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIVTPFNFPLEIPVLQLMGALYMGNKPILKVDSKVSIVMEQMIRLLHHCGLPMEDLDFINSDGKTMNKLLLEANPRMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVQEVDYVAWVCDQDAYACSGQKCSAQSIVFMHENWFKSSLISRMKDLAARRKLEDLTIGPVLSFTTEAMLEHMNKLLQIPGSELLFGGKALENHSIPPIYGALKPTAIYIPLEEMLKDGNYELVTREIFGPFQVVTDYKDNQLPRVLEALERMHAHLTAAVVSNDSLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPSHWEIPPAT* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6290104 6305763 - Vvi17g517 Vvi17g517 779214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g517 546 Pfam Aldehyde dehydrogenase family 60 487 IPR015590 GO:0016491
Vvi17g517 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 36 295 IPR016162 GO:0016491
Vvi17g517 546 CDD ALDH_F12_P5CDH 46 534 - -
Vvi17g517 546 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 19 545 - -
Vvi17g517 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 489 IPR016163 GO:0016620
Vvi17g517 546 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 19 545 IPR044638 GO:0004029
Vvi17g517 546 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 320 331 IPR016160 GO:0016491
Vvi17g517 546 SUPERFAMILY ALDH-like 44 513 IPR016161 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g517 K00294 - vvi:100251938 1108.2