Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g518 ATGAACAAGGAAGAAAGAGCTATGGAGGCCGCTTTGAGAAGATCTGGTCATGGGGTTGTTGTGAAGGAAGAGAGGAGACCTGAAGCACCATGCGATGACGATGAAGGTTGCAGAGACAAGGCTGCTGCCAAGGCTGATAAAACGAAGTCATCTTCCCCCAGACGCGAGGATTTAAACTGCAGTTCTGTGCAGTTACCAGCAATAAGTAAGATGGAAAGATCGATATCGTCTGCTGAACCGGACTCAGGAGCGAGTTCCTCGAGCCACAAGGATCAGGATGATCAGCTTGAATCAGCCAAAGCTGAAATGGGCGAGGTGAGAGAAGAAAATCAAAGGCTAAGGATGTATTTAGATCAAATTATGAAGGATTACAAGACTCTTCAAATGCAATTCTACGACGTTGTCCGACAAGAAGCTAAGGAATCCACAGAAAAGGCGAGCATTTTACAAATTGAGGAACCCGAGTTTGTTTCCCTTAGCCTGGGAAGAGTTTCAAGTGACCCAAAAAAGGATGAAAAGAACAAAACTACTAGCAAAGTGGAGGATGACGGAGTCAAAGGCGGCCTTAGTCTCGGACTTGACTGCAAATTTGAAGTGCTGAATCCAAGCCCTGAGAATAGCTTTGGAGGACCAAAGGAAGCTGCCGGAGAGAGTTGGCCACCTAGTAAAAGCCTGAAGACAATGAGAACCGGAGATGATGAAATTTCACAACAGAACCCCGCGAAGAGGTGTAGGGTTTCTGTGAGAGCTAGATGTGATACCCCAACGATGAATGATGGATGTCAATGGAGGAAATATGGGCAGAAGATTGCAAAAGGAAACCCATGTCCACGAGCATACTATCGCTGCACAGTTGCACCATCTTGCCCAGTTAGAAAACAGGTACAAAGATTTGCTGAAGACATGTCCATCTTGATTACCACCTATGAAGGGACACACAACCATCCACTCCCTTACTCAGCCACTGCAATGGCTTCCACCACTTCAGCAGCTGCTTCCATGCTCATGTCCGGCTCCTCGAGCTCTCAATCTGGCTCTGGCTCCTGCCCGTTATCAGCCACTAGTGCTGATCTCCATGGGGTGAACTTTTATCTATCTGACAACTCAAAATCAAAGCAATTCTACTCAATCAACTCGTCGCTCTCGGCTGTGTCTTCAAACCCAACAATTACACTTGACCTTACAACAGCCTCATCCTCTTCCTCTTCCTCATCCCATTTCAATAGGTTATCTTCAAATTATCCTCCCCCAAGATTTCCTTCTACAGGTTTCAACTTCAGTTCTTCTGAATCCAACTCTCTGCCTATCTCCTGGAGCAATGGATTGCTTAGCTATGGCAGTACTACTACTACTCAACCCTACAACAGGAACCATACTGGATCCCAAAATTCTGGACGACATACTCAGGAAAATTTCTTTCATCCCCACGTCCAAAAGAACAACCCAGCTCCTGTTCAACAGCCCCTACCAGATCCTATTGCAGCTGCAACAAAGGCAATCGCATCAGACCCGAGTTTCCAATCTGCTTTAGCAGCTGCCCTTACATCAATAATGGGTGCTAATGGTGGAACCCATGCTAACCATAGTGGAGGAGAGGCCTTTGGCCAGAAATTGATGTGGGGTAGTGAATCCCTTCCTGCTGTTTCTACCTATCAGTCAACCTCTAAAGGAAATGGATGTGCATCCAGCTACTTGAACAAATCGCCACCCACAAATTCTCAGCCGGGAAGCTTGATGTTTCTTCCTCCTGCATTGCCATTTTCCACCTCTAAGAATGCATCTGCATCCCCTGCTGAAAATAGAGAGCACACTAGTTGA 1818 46.42 MNKEERAMEAALRRSGHGVVVKEERRPEAPCDDDEGCRDKAAAKADKTKSSSPRREDLNCSSVQLPAISKMERSISSAEPDSGASSSSHKDQDDQLESAKAEMGEVREENQRLRMYLDQIMKDYKTLQMQFYDVVRQEAKESTEKASILQIEEPEFVSLSLGRVSSDPKKDEKNKTTSKVEDDGVKGGLSLGLDCKFEVLNPSPENSFGGPKEAAGESWPPSKSLKTMRTGDDEISQQNPAKRCRVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRFAEDMSILITTYEGTHNHPLPYSATAMASTTSAAASMLMSGSSSSQSGSGSCPLSATSADLHGVNFYLSDNSKSKQFYSINSSLSAVSSNPTITLDLTTASSSSSSSSHFNRLSSNYPPPRFPSTGFNFSSSESNSLPISWSNGLLSYGSTTTTQPYNRNHTGSQNSGRHTQENFFHPHVQKNNPAPVQQPLPDPIAAATKAIASDPSFQSALAAALTSIMGANGGTHANHSGGEAFGQKLMWGSESLPAVSTYQSTSKGNGCASSYLNKSPPTNSQPGSLMFLPPALPFSTSKNASASPAENREHTS* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6316167 6320317 + Vvi17g518 Vvi17g518 779215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g518 605 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g518 605 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g518 605 MobiDBLite consensus disorder prediction 449 469 - -
Vvi17g518 605 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 83 601 IPR044810 GO:0003700
Vvi17g518 605 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g518 605 MobiDBLite consensus disorder prediction 55 85 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 587 605 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 165 182 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 549 578 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 549 605 - -
Vvi17g518 605 Pfam WRKY DNA -binding domain 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g518 605 Gene3D WRKY domain 242 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g518 605 MobiDBLite consensus disorder prediction 1 110 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 159 183 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 204 240 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 86 110 - -
Vvi17g518 605 MobiDBLite consensus disorder prediction 1 54 - -
Vvi17g518 605 Coils Coil 89 116 - -
Vvi17g518 605 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 83 601 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1493 Vvi17g518 ECH
Vvi1g861 Vvi17g518 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14206 PF03106 WRKY 8.60E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g518 - - vvi:100250047 1137.09