Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g519 ATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGTCCAGATGACACTCCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTTTCGGAGGAGTATCCAAACAAACCACCAACAGTGCGATTTGTTTCCCGTATGTTCCATCCAAATATCTATGCAGATGGAAGTATTTGTCTCGATATTCTACAAAATCAGTGGAGTCCTATATATGATGTAGCAGCTATACTTACGTCTATTCAGTCACTGCTCTGTGATCCCAACCCCAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAATAAGCGTGAGTACAACAGAAGAGTGAGGGAAATTGTTGAGCAGAGCTGGACAGCGGACTAA 459 44.23 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEEYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6349779 6356685 + Vvi17g519 Vvi17g519 779216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g519 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Vvi17g519 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Vvi17g519 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Vvi17g519 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Vvi17g519 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Vvi17g519 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Vvi17g519 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Vvi17g519 152 SMART ubc_7 7 150 - -
Vvi17g519 152 CDD UBCc 7 145 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g519 K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] - vvi:100246805 319.316
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g865 Vvi17g519 ECH
Vvi14g1495 Vvi17g519 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0084 Cone19ag0084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71