Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g52 ATGCTTATTGGGTCAACTACCCTAGATGCCTTGAACAGGACTCGACCTGTAGTATACGCATCCAGAAGTTATGCATCTGGACCAAAGCAGATGACAGTACGGGAAGCTTTGAATACTGCAATTGATGAAGAGATGTCTGCAGATCCTAAAGTTTTTTTGATGGGTGAAGAGGTTGGTGAATATCAAGGTGCCTACAAGATTTCCAAAGGGCTTTTGGACAAGTATGGTCCTGGGAGGGTTATTGATACTCCAATCACAGAGGCGGGCTTTGCCGGAATTGGAGTTGGTGCTGCTTACCATGGTCTTAAGCCTATCATAGAATTTATGACATTTAATTTCTCCTTGCAGGCAATTGACCATATAATTAATTCAGCTGCAAAGTCAAACTATATGTCTGCTGGTCAGATATCTGTGCCAATTGTTTTCAGAGGGCCAAATGGGGCTGCTGCAGGAGTTGGTGCCCAGCATTCTCAGTGCTTTGCAGCATGGTATGGTGCATGCCCTGGTTTGAAGGTGCTGGTTCCATATTCATCAGAGGACGCTCGGGGCCTGTTAAAAGCTGCTATAAGGGACCCTGACCCTGTTGTTTTCCTTGAAAACGAATTGCTATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAGATAGAGCGAGAAGGAAAGGATGTAACTATTGTCACTTACGCAAGGATGGTTGATTATTCTCTCCAGGCAGCTGAAATACTCGCAAAAGAAGGAATTAGTGCTGAGGTTATAAATCTTCGCTCAATCCGTCCCCTTGACAGATCGGCAATCAATGCTTCAGTCAGGAAAACTAGCAGACTGGTGACTGTTGAAGAGGGGTTCCCTCAACATGGTGTTGGCGCTGAGATCTGTATGTCTGTTATTGAGGAGAGCTTTGATTCTCTTGATGCACCTGTCGAAAGGATTGCAGGGGCAGATATTCCCATGCCTTATGCAGCAAATCTTGAGAGAATGGCTCTTCCACAGATTGATGATATCATTCGTGCGGCAAAGAGGACTTGCTACAGATCAGCTCCTAAGGCTGCAGCCGCTTAG 1095 45.48 MLIGSTTLDALNRTRPVVYASRSYASGPKQMTVREALNTAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLDKYGPGRVIDTPITEAGFAGIGVGAAYHGLKPIIEFMTFNFSLQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYGACPGLKVLVPYSSEDARGLLKAAIRDPDPVVFLENELLYGQSFPVSEEALDSSFSLPIGKAKIEREGKDVTIVTYARMVDYSLQAAEILAKEGISAEVINLRSIRPLDRSAINASVRKTSRLVTVEEGFPQHGVGAEICMSVIEESFDSLDAPVERIAGADIPMPYAANLERMALPQIDDIIRAAKRTCYRSAPKAAAA* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 443669 454615 - Vvi17g52 Vvi17g52 778749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g52 364 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 29 234 IPR029061 -
Vvi17g52 364 SMART Transket_pyr_3 31 206 IPR005475 -
Vvi17g52 364 Pfam Transketolase, pyrimidine binding domain 30 205 IPR005475 -
Vvi17g52 364 Gene3D - 223 355 IPR009014 GO:0003824
Vvi17g52 364 SUPERFAMILY TK C-terminal domain-like 219 353 IPR009014 GO:0003824
Vvi17g52 364 CDD TPP_PYR_E1-PDHc-beta_like 35 201 - -
Vvi17g52 364 Pfam Transketolase, C-terminal domain 224 346 IPR033248 -
Vvi17g52 364 Gene3D - 30 222 - -
Vvi17g52 364 PANTHER DEHYDROGENASE RELATED 12 359 IPR027110 GO:0004739|GO:0006086
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g52 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - vvi:100247469 695.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1321 Vvi17g52 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45