Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g521 ATGGTAGATTTCGTCCTTGGAAGGACTACATTTGTCTGGCCGTGCCATCTTTTGTTCTTCTTGCAAGTGATTTCCCAAGAAACATTGGAAACAATTTGCACAAGGAGGGGAGTGCAGGCTTTTGTGATTTTATATTGCAGTATTCCTACAATGGGCAAATCACCAGGAAAATGGATCAAGACCCTACTTTTTGGAAAGAAAGCATCCAAATCTAATTTTTCAAAAGGAAGAGAGAAAGTTGCAAATGAGAGAGAAGTGTGGGTTGCTGCCAAGGCACCAGAAGCTGACTTGGGTTTGGATCCTCTTGTGGCATCAGAGGCTCCTAATATTATTGACAAAAATGAGATGTTAGAATTTGAGAACAGGGAAGCTTCTGCGGGTGGAATATTGTCTGGGGATCTGGATGCAGATATTCAAGGGTGCAGACAACTCAGTACACTAAATAATCCTGAAAGGATAAGACAGGAGCGAGCTGCTACAAAGGCCCAGGCTGCTTTTAGGGGTTATCTGGCTCGCCGTGCATTTCGGGCCCTCAAAGGGATAATAAGGTTGCAGGCTCTTATCCGTGGCCACTTGGTGAGGAGACAAGCTATTTGTACCTTATACTGTATGCTGGGAATTGTCAAGATACAGGCCCTTGCTCGTGGAAGAAGGATCAGGCATTCTGAACTTGGCCTCAGAGTCAATAAGAAATGCATTCAAGTGAAACCTCTGAAGGGCAAGCTTGGGGATCCTGCTGGAGTTAGCTCATCCACACAAATAGCAAAGCGAACCGCAAATGCTTTTGTTCATAAGCTTCTTGCTTCATCTCCCACTGTGATGCCTCTACACCTTCAATATGATTCTGCTGAACCAAATTCAGACTTCTATTGGTTGCAATGCTGGTCAGCATCCCACTTCTGGAAACCGATTCCCCAACCAAGGCAAGTTCCTGACTCAAAATCCCAGAAAAAGCAGGGTAACCCTCTAGCTATAGAAACTGAAACAGGTAGGCCCAAGCGCAGTGTCAGAAGGATCCCTGCTATGAATGTTGACAGTGTCTCAGCCCAATCAACCACTGAATTTGAGAAACCCAAGCGCAACTTCAAGAAACTTTCAAGCCGTCCAGCAGACCCAGTACTGGAACATCCACAAAATGAGCTTGAAAAAGTTAAACGTAATTTGAGAAAAGTTCATAACCCAGTTGTGGAGAGCTCTGCCCAGCCGGGCAATGAAACTGAGAAACCAAAGCAAAGTATGGAAAAGATGTCGAGCACTCCAGGACATGATGTTTTGGAGCAGAGCATGGGTGATTCTGCAGAGAAGATGAACATGGAGACACCTGTGACGGTGTCCAAACTGCCTGAAGTAGAAACAACAACAGAACCACCGGCGGTGATATGGGTGAATGAGGCATCGGATTCATTACACAATGATCAAACTGTAGTTGAGTTACAGCCGGTAGAGAACAGTGGAAAAGATGAAAATATTCCTGTGGCAAATGAGGAATTGAGCTCTAAGGAGGATGCTATTAGCAATGAAAACCAAAAATCAAGAAATGGCAAAGGAGGAAATAGAAGTGAGAGATCCATTTTGTCTTCAAAAGACGGAAATGCAAAGGTGGCAGTCCAAGCAGAGTGGAGAAGGTGA 1629 44.69 MVDFVLGRTTFVWPCHLLFFLQVISQETLETICTRRGVQAFVILYCSIPTMGKSPGKWIKTLLFGKKASKSNFSKGREKVANEREVWVAAKAPEADLGLDPLVASEAPNIIDKNEMLEFENREASAGGILSGDLDADIQGCRQLSTLNNPERIRQERAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRHSELGLRVNKKCIQVKPLKGKLGDPAGVSSSTQIAKRTANAFVHKLLASSPTVMPLHLQYDSAEPNSDFYWLQCWSASHFWKPIPQPRQVPDSKSQKKQGNPLAIETETGRPKRSVRRIPAMNVDSVSAQSTTEFEKPKRNFKKLSSRPADPVLEHPQNELEKVKRNLRKVHNPVVESSAQPGNETEKPKQSMEKMSSTPGHDVLEQSMGDSAEKMNMETPVTVSKLPEVETTTEPPAVIWVNEASDSLHNDQTVVELQPVENSGKDENIPVANEELSSKEDAISNENQKSRNGKGGNRSERSILSSKDGNAKVAVQAEWRR* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6368467 6379348 + Vvi17g521 Vvi17g521 779218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g521 542 Gene3D - 153 201 - -
Vvi17g521 542 MobiDBLite consensus disorder prediction 306 379 - -
Vvi17g521 542 PANTHER PROTEIN IQ-DOMAIN 31 51 467 - -
Vvi17g521 542 MobiDBLite consensus disorder prediction 356 379 - -
Vvi17g521 542 MobiDBLite consensus disorder prediction 509 527 - -
Vvi17g521 542 MobiDBLite consensus disorder prediction 466 480 - -
Vvi17g521 542 MobiDBLite consensus disorder prediction 393 542 - -
Vvi17g521 542 ProSiteProfiles IQ motif profile. 179 206 IPR000048 GO:0005515
Vvi17g521 542 MobiDBLite consensus disorder prediction 397 425 - -
Vvi17g521 542 SMART iq_5 154 176 IPR000048 GO:0005515
Vvi17g521 542 SMART iq_5 177 198 IPR000048 GO:0005515
Vvi17g521 542 MobiDBLite consensus disorder prediction 309 323 - -
Vvi17g521 542 PANTHER IQ-DOMAIN 5-RELATED 51 467 - -
Vvi17g521 542 Pfam IQ calmodulin-binding motif 156 176 IPR000048 GO:0005515
Vvi17g521 542 Pfam IQ calmodulin-binding motif 179 196 IPR000048 GO:0005515
Vvi17g521 542 ProSiteProfiles IQ motif profile. 155 183 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g521 - - - vvi:100263965 915.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1496 Vvi17g521 ECH
Vvi1g867 Vvi17g521 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34