Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g530 ATGTCTACCCAAAGAGCAAGAGCTTCACGAGTCACCGACGATGAGATTAACGACCTCATCCTCAAACTGCAGGCGTTGCTACCTCATTCAAATCAAAGGCGCACGTCTACAGGGGCATCGGCATGGAGGATTCTGAAAGAAACGTGCAGTTACATAAAGAGGCTACACAGAGAGGTGGGCGACCTGAGTGAGAGACTATCCCAGCTTCTTGATTCTCTTGATAATATTAATGGTGTTGAGGTTGAGCAACTTAGAAGTTTATTGCAGCGATAG 273 46.52 MSTQRARASRVTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRLHREVGDLSERLSQLLDSLDNINGVEVEQLRSLLQR* 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6493135 6493937 + Vvi17g530 Vvi17g530 779227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g530 90 PANTHER DNA BINDING PROTEIN 1 89 - -
Vvi17g530 90 Pfam Helix-loop-helix DNA-binding domain 14 55 IPR011598 GO:0046983
Vvi17g530 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 71 IPR036638 GO:0046983
Vvi17g530 90 ProSiteProfiles RUN domain profile. 10 90 IPR004012 -
Vvi17g530 90 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Vvi17g530 90 Coils Coil 52 72 - -
Vvi17g530 90 Gene3D - 4 89 IPR036638 GO:0046983
Vvi17g530 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g530 - - - tss:122671228 100.523
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14208 PF00010 HLH 3.00E-05 No_clan Vvi TF