Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g539 ATGGATAATGCAGCCAACAGTCTCCATCTTCGGGACGCCTCATTTTCTGCTTACCTCAGCACGGCAGAGGAGAACTTTGCAGTCAAGCTTGCTGAGTCGATTCAGAGCCCCTATCTGCCCCTTACTTCAACGCAAGAGGCTGCCTATCCAGTAAACTTAGGAAGAACCATGTCTGTGGAGGAGGGTGAGCTTAGGGTCTTTGGCGCTGAGAAATACTTCAACATGAAAATGGATGATGGGAGGCGAAGGCTTACCACCAGTAGTTCATTGACGCACAGGCAAATAAAAGAAGACCGAGCTGATCTGCACTGTACTAAACCAAAAATCAGGCCAGGAACTCCGAGTGCAAGCTCTGAAGCAAGTTGGAACAGCCACGCTGCATTATTGCCAAGGCTCCTGAGAAACCCATCTCCCAGTAAGCAAAGGAAGGCAAATGCAAAGATGATTTTTGCTGGTTTTGGTTGCAATGGATCTTGTTCTGATAAGAAATCCGTCTATGTTGATACAAATGCTGAGCCTGGAGGGGCTTTCCCAACCAGGGTTTCCATAGACAAGAGAGCAGAAGAGGAGGGGCGAAAGTCCCTAGAGGTGTTTGGCTCCCATATGCTGAAAAAGGGAGATGTTGCAACCAACCTAGAGAGGAAACTCTCTGTGCTCACTTGGGATGCCATTCCAAAAGTCCAGACCGTTCCAACAACTTCTGAAGGCACGGGAATATATGAAGACAATGAGAGTGATGCTAGTTCTGATCTGTTTGAGATAGAGAACCTGTCCGGCAGTGCCCACCCATTGTTCAATAGGCAAGCCTCAGATGGCATGTCCAGCTGTACCCGGTATGAGCCAAGCGAGGCCAGCATTGAGTGGAGTGTGGTCACAGCCAGTGCAGCTGATTTCTCAGTGACTTCAGATTTTGACGAGAAGAAACAGGTGGAGAGTACTGAAAATTCAAGGGAAATGAATTTTGCAAGTACACCCACTAGACCAAGCAAAACCAAATCCTCAGTGGGCAAGGAAGCACAACGAAGCCGTCCCACTGGACTGTTGGGATGTAGGAGTGACAAAGCGGTGAGAGTTTCTGAGCCAGCATATCGAACAAATGACAAGGTAAAGTCTGACCCGGGATGGCATCATAGGTTGGATTCCTCCATGCCACTAGGGAAGTCCCAAGGCGAGAATAAGGTGAAAGATTTCGAAGTGTTTCACTTACTAATTTCTCCTTGCAATGTATCCCAATAG 1236 47.98 MDNAANSLHLRDASFSAYLSTAEENFAVKLAESIQSPYLPLTSTQEAAYPVNLGRTMSVEEGELRVFGAEKYFNMKMDDGRRRLTTSSSLTHRQIKEDRADLHCTKPKIRPGTPSASSEASWNSHAALLPRLLRNPSPSKQRKANAKMIFAGFGCNGSCSDKKSVYVDTNAEPGGAFPTRVSIDKRAEEEGRKSLEVFGSHMLKKGDVATNLERKLSVLTWDAIPKVQTVPTTSEGTGIYEDNESDASSDLFEIENLSGSAHPLFNRQASDGMSSCTRYEPSEASIEWSVVTASAADFSVTSDFDEKKQVESTENSREMNFASTPTRPSKTKSSVGKEAQRSRPTGLLGCRSDKAVRVSEPAYRTNDKVKSDPGWHHRLDSSMPLGKSQGENKVKDFEVFHLLISPCNVSQ* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6613319 6614938 - Vvi17g539 Vvi17g539 779236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g539 411 MobiDBLite consensus disorder prediction 303 389 - -
Vvi17g539 411 MobiDBLite consensus disorder prediction 357 377 - -
Vvi17g539 411 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 3 1 385 IPR039819 -
Vvi17g539 411 MobiDBLite consensus disorder prediction 315 340 - -
Vvi17g539 411 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 1 385 IPR039615 GO:0009638
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g539 - - - vvi:104882316 428.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g904 Vvi17g539 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g539 Blo04g00769 . . . . Bpe13g00286 . . Cmo13g01179 . . . . . . Cpe20g00025 . . . . . . . . . . . . . . . . . . . Lsi02g00066 Csa01g00538 Chy12g01550 Cme12g02004 . . . Bda14g00848 . Bpe15g00603 . . . . . . . Car13g00960 . . . . . . . . . . Cla04g01205 Cam04g1271 Cec01g1779 Cco01g1826 Clacu04g1299 Cmu04g1275 Cre01g1565 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008262 1 1 3 0 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 35