Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g54 ATGGCGACGCCGAAGGAGCATATAGAGGAGATAAGGAGGACGAAGTTCTCGATCGGAGGAGAGCAGAATCCGCTGACGGAGGATCTTCACCAGGCGGTGAAGAATCTCTCTGCTGAGCTTTACGCTAAGGATGTTCATTTCCTCATGGAACTCATTCAGAATGCAGAAGATAACGAATATGGGGAAGACGTAAATCCGTCGTTGGAGCTCGTTATAACTTCAAAGGACATAACTGGCACTAGAGCACTAATGACGTTGTTGATTTTCAACAACGAAAAGGGATTTTCAGCTAAAAATATTGAGTCTATCTGCGGTGTTGGGAGGTCCACCAAGAAAGGCAACAGGAAGCGCGGTTATATTGGAGAGAAAGGAATTGGATTCAAGAGTGTATTTTTGATCACAGCTCAGCCTTACATATTCAGTAATGGATATCAGATACGATTCAATGAAGAGCCTTGCCCGCACAGCAATCTTGGGTACATTGTCCCTGAATGGGTTGAGCAGAATCCAAGTCTTGATGACATAAAACAAATATATGGTTCTCATGCAGTCCTTCCAACCACTACCATAATCTTGCCTCTAAAGCCTGACAAGATCAAGCCTGTGAAGGAACAGCTCTCAAGTATTCAACCTGAAGTTCTATTATTTCTTTCAAAGATTAAGCACTTTTCTGTCAAGGAAGATAATGAGGATCCAAGGCTCAATACTGTGAATGCCATCTCTATTTCAAGTGAAATTAACTTTGTTACAAGGAAGAATATTGATGCTGATTCCTATACTCTCCATCTCTCTGCGGATGAAACTAGTGATGTGACTGAAAAAGAATGCAGCTACTATATGTGGAGGCAGAAGTTCCCTGTCAGGCAGGAAAATCAAGTAGAAAGAAGACTTGAAGTGGAGGAGTGGGTTATTACGCTGGCATTTCCACTTGGACAGCGACTGAATAGGGGGATGAGCTCTCCTGGAGTCTATGCATTTCTTCCCACGGAGATGGTTACAAATTTTCCCTTCATTATTCAGGCAGATTTTGTTCTTGCATCATCCAGGGAAACAATCCTCTTGGACAACAAATGGAACCAAGGCATTCTCGATTGTGTGCCTTCTGCTTTTCTTAATGCCCTTATTTCACTGGTTACAACATCAGAAGATGTTCCAGTTTCTACACTGACCCCAATGTTTAAGTTCTTACCTATTGACAGCTCTTCTTATCCAAAGCTCAATGTCGTGAGGGAGTCTATCAAAGCAAAACTGCTCAAGGAGAATATCATACCATGTGAGTCGTATTCAGACCAGAAGATCTTTCGTAAACCTTGTGAAGTGGGTAGGTTAATGCCTTCTTTCTGGAATATCCTCAAAAAGGCAAGGAATCAAGGGGTAAGCTTGGATTCTCTGTCATCCCATGGAAGCTATATCCTGAATTCTTCATTTGATACAGAGGAGTACGATCACATATTGAATTTCCTTGGTGTGAAACCTGTCAATAGCGAATGGTATGCCACGTGTATCAGGAGTTCCAATCTTCTCTTGGGAGTGACAGAGGATGATTATTTGGAACTTCTACTCTTTATTGCTGAGAAATGGAGTTCCTCTTTCCACAGCACGGACATGAGGAATGTTCCTCTCCTGAAATATGTTGGTCCTGATGGAAATGTTGTTTTGTGCCCTACAAGCAATGTCTCAATGTGGAATGGTGGAAGTATGATTTGTATGTCCCGTGAGTCTCAGCATATTTCATGGTTGATAGACTGGAACAGGGAATTTAGACGTGTGACAGATCGATATTTTATGCCCAAAAGCACACAAGAAGCTATCAAAGTTTTTTCTAAGAGAGAGACTCTGTTGGAATGGCTTCAAAATCAAGTGAAGGTTCGCGTTGTCAGTGTGTACGACTTTGCTGTCATTCTTTATAATTCTTTTAAGGGTGACCGACAGCTTGCTATTGCCTATGTTCACTTCCTTTATCATTCCCTCTCGAAGAGTTATCTACCAAAGGGGGATGTTGACAATTTGTGTCGTATCATGCCACTTGTAGATAACTATGGGCATGTGAGCACTCAGAGAAAAGGTGTTCTCGTTCCTGCTAACGGAAGCAAATGGGTGGGATTAATGGGTGCAAATCCGTGGAGGGGAGCAGGCTATGTTGAGCTGGGAGAAGACTATTTGCGCTCGGGCAGTTATGCAGGTTCATTCACACCAGAGATGCAGCTAATGACGTTTCTCAAAACTCATGTTGCAGCTTCTGATATACCTGATATATCTCCTCCCGACGCCGAGTTATCTGCCGCATATGCACCACTCACCAAGCAAAATGCATTCTTGCTGTTGGACTGGATTCACAACCTGAAATATAAGCAAGGTCTGCCAGCTAAGTTCCTGACATCCATTAAGATGGGAAGCTGGCTCAAAATTTCCCTCAGTGGCAGTCCTGGATATAGGCCACCATCACAGTCTTTCCTGCTTGCTTCATCAGATGAAAATCTTCTGCAGGATGAGTCAGTAATGGTTGATATTCCATTGATTGACCAAGGATTTTATGGAAATGGCATCAATAATTATAAGGAGGAGCTCAAAACTGTTGGAGTAAAGTTTGAATATGGCGAAGCAGCATCAAAGATGGAAGGTGGTTGA 2628 42.66 MATPKEHIEEIRRTKFSIGGEQNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNEYGEDVNPSLELVITSKDITGTRALMTLLIFNNEKGFSAKNIESICGVGRSTKKGNRKRGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNEEPCPHSNLGYIVPEWVEQNPSLDDIKQIYGSHAVLPTTTIILPLKPDKIKPVKEQLSSIQPEVLLFLSKIKHFSVKEDNEDPRLNTVNAISISSEINFVTRKNIDADSYTLHLSADETSDVTEKECSYYMWRQKFPVRQENQVERRLEVEEWVITLAFPLGQRLNRGMSSPGVYAFLPTEMVTNFPFIIQADFVLASSRETILLDNKWNQGILDCVPSAFLNALISLVTTSEDVPVSTLTPMFKFLPIDSSSYPKLNVVRESIKAKLLKENIIPCESYSDQKIFRKPCEVGRLMPSFWNILKKARNQGVSLDSLSSHGSYILNSSFDTEEYDHILNFLGVKPVNSEWYATCIRSSNLLLGVTEDDYLELLLFIAEKWSSSFHSTDMRNVPLLKYVGPDGNVVLCPTSNVSMWNGGSMICMSRESQHISWLIDWNREFRRVTDRYFMPKSTQEAIKVFSKRETLLEWLQNQVKVRVVSVYDFAVILYNSFKGDRQLAIAYVHFLYHSLSKSYLPKGDVDNLCRIMPLVDNYGHVSTQRKGVLVPANGSKWVGLMGANPWRGAGYVELGEDYLRSGSYAGSFTPEMQLMTFLKTHVAASDIPDISPPDAELSAAYAPLTKQNAFLLLDWIHNLKYKQGLPAKFLTSIKMGSWLKISLSGSPGYRPPSQSFLLASSDENLLQDESVMVDIPLIDQGFYGNGINNYKEELKTVGVKFEYGEAASKMEGG* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 467821 477779 + Vvi17g54 Vvi17g54 778751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g54 875 PANTHER WU:FJ29H11 5 870 - -
Vvi17g54 875 PANTHER ATP/DNA BINDING PROTEIN-RELATED 5 870 - -
Vvi17g54 875 Gene3D - 7 220 IPR036890 -
Vvi17g54 875 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 28 200 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g54 - - - vvi:100247409 1748.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g54 . . . . . . . . . . Cma10g00035 . Car10g00025 . Sed12g2539 . . Bhi02g00645 Tan09g2414 Cmetu02g0435 . . . . Cla06g01770 Cam06g1962 Cec06g2013 Cco06g2020 Clacu06g1920 Cmu06g1861 Cre06g2674 . . . . . . . . . . . . . . . . . Cmo10g00031 . . . . . . Cpe18g00925 . . . . . . . . . . . . . . Lsi06g01667 Csa01g00024 Chy02g02689 Cme02g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003517 0 3 0 0 0 2 1 4 2 1 2 2 1 1 2 1 2 1 1 2 1 1 1 2 2 2 2 4 1 3 47