Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g544 | ATGAGTCCTGCTTTGCTTCCTAAACATGTTGCTGCAGTGGTAAAATATCAGAAGAATCCTCTTAAAGCACTGGAAATATTCAATTCAGTTAAAAAGGAGGATGGGTTCAAGCACACATTGTTAACCTATAAGGGCATGATTGAAAAGCTTGGGTTTCATGGGGAGTTCGAGGCCATGGAAGAGGTGCTCGCGGAGACGAGGATGAATATCGACAATGGTTTATTAGAAGGAGTTTATATTGGGGCCATGAGAAATTATGGAAGAAAAGGAAAAATTCAAGAAGCTGTGGATGTATTTGAGAGGATGGATTTTTTCAATTGTGAGCCATCGGTTCAGTCATATAATGCGATAATGAATATACTGGTGGAGTATCGGTATTTTGATCAAGCCCACAAGGTGTATATGAGAATGAGAGACAAGGGTATAGTTCCTGATGTTTACACCTTCACAATTAGGATGAAGTCCTTTTGTAGGACCAGTAGGCCACATGCTGCTCGGAGGCTTCTGAATAACATGCCTTCCCAGGGGTGTGAATCAAGTGCAGTTGCATATTGTACAGTGATAGGTGGGTTTTATGAAGAGAATCATCGAGTTGAAGCACATGAATTGTTTGAGGAAATGCTTGGTCTAGGTATTTGTCCAGATATAATGGCATTTAATAAGCTTATACACACACTTTGTAGGAAGGGGCATGTTCAAGAAAGTGAAAGACTTCTCAACAAGGTTTTAAAGAGGGGAGTGTCTCCAAATTTATTTACAGTCAATATCTTCATTCAAGGCTTTTGTCAAAGGGCCATGCTTAATGAAGCTATCCGTTTGTTGGATGGTGTAGGGAGGGGTCTGACTCCTGATGTGATCACATACAACACACTCATATGTGGCCTGTGTAAGAACTTTAAGGTTGTGGAAGCTGAGCATTATTTGCGTAAGATGGTGAATGAAGGGTATGAGCCTGATGGTTTCACCTACAACAGTATTATTGATGGATATTGCAAGCTGGGTATGATGCAAAATGCAGATCAAATTCTGAGAGATGGAGCTTTCAAGGGGTTTGTGCCTGATGAATCCACATATTGCTCCCTAATCAATGGGTTATGCCAGGATGGTGACATAGATAGGGCAATAAATGTATTTAATGAAGCCATGGAAAAAGGATTAAAGCCTAATCTTGTTCTCTGCAACACATTAGTCAAAGGTTTGTCTCAGCAGGGACTTATTTTGCAAGCCTTGAAGCTGATGAATGAAATGTCAGAGAATGGTTGCAGTCCTGACATATGGACGTACAATTTAGTTATAAATGGTTTGTGCAAGATAGGTTGTGTATCTGATGCCGATAACCTAGTAATTGATGCTATAGCCAAAGGGCATCTTCCCGATGTTTTCACTTTTAATACCCTAATTGATGGTTATTGTAAAAAACTGAAGTTGGACAATGCGATTGAGATCGTTGATAGAATGTGGAACCATGGTGTTTCCCCAGATGTGATCACATATAACTCCATTCTCAATGGCCTCTGCAAGGCTGGAAAGTATGAAGATGTAATGGGAACTTTCAAATTAATGATGGAGAAGGGGTGTGTTCCTAACATTATCACATATAATATACTGACAGAAAGCTTTTGCAAAGCTCGAAAAGTAGAGGAAGCTCTGAACTTGATTGAGGAAATGCAAAACAAGGGTCTGACTCCAGATGTTGTCAATTTTGGGACATTGATGAAAGGTTTTTGCGATAATGGGGATTTGGATGGAGCCTACCAGCTATTTAAAAGAGTAGATGAGCAATATAAATTTTCTCATACAATAGCAACTTACAATATCATGATCAATGCATTTGCTGGGAAGCTGAATATGAACATGGCAGAAAAGCTTTTTAATAAGATGTGTGAAAATGGCTTCTCTCCAGACAGTTACACTTACCGTGTTATGATTGATGGTTTCTGTAAAACAGGAAACATTAATTCTGGGTACAGTTTTCTTCTGGTAAAGATTGAGAAGGGATTGATTCCATCACTGACAACATTTGGAAGGGTATTAAACTGTCTTTGCCTGAAGCGTAGAGTTCATGAAGCAGTTGGTATCATCCACCTTATGGTGCATAAAGGTATTGTACCAGAGGTTGTTAACACAATTTTTGAGGCTGATAAGAAGGAAGTAGCAGCACCTAAGATTGTTGTAGAAAACTTGATGAAGAAGGGTCATATAACTTACTTTGCATATGAAATTCTGCATGATGGCATTAGAGATAAGAAGCTATCAAGGAAGAAGCTTCCAACTTCCCAGAAGGTGTTCTCTTGA | 2295 | 39.26 | MSPALLPKHVAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVNTIFEADKKEVAAPKIVVENLMKKGHITYFAYEILHDGIRDKKLSRKKLPTSQKVFS* | 765 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 6661140 | 6663435 | + | Vvi17g544 | Vvi17g544 | 779241 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 354 | 388 | IPR002885 | - | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 209 | 278 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 383 | 451 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 137 | 208 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 520 | 593 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 452 | 519 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 2 | 136 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 389 | 423 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat | 182 | 212 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat | 83 | 103 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat | 673 | 702 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 529 | 563 | IPR002885 | - | |
| Vvi17g544 | 764 | SUPERFAMILY | HCP-like | 81 | 393 | - | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 145 | 179 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 424 | 458 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 494 | 528 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 601 | 648 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 528 | 577 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 283 | 332 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 458 | 507 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 214 | 263 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 388 | 437 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat family | 109 | 158 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 218 | 250 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 496 | 530 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 568 | 591 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 531 | 565 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 147 | 179 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 113 | 146 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 391 | 425 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 603 | 636 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 286 | 319 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 357 | 389 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 82 | 111 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 427 | 460 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 461 | 495 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 182 | 216 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 321 | 354 | IPR002885 | - | |
| Vvi17g544 | 764 | TIGRFAM | PPR: pentatricopeptide repeat domain | 673 | 704 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 75 | 109 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 670 | 704 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 215 | 249 | IPR002885 | - | |
| Vvi17g544 | 764 | Pfam | PPR repeat | 349 | 380 | IPR002885 | - | |
| Vvi17g544 | 764 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 723 | - | - | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 279 | 382 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | Gene3D | Tetratricopeptide repeat domain | 594 | 736 | IPR011990 | GO:0005515 | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 459 | 493 | IPR002885 | - | |
| Vvi17g544 | 764 | SUPERFAMILY | HCP-like | 467 | 658 | - | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 319 | 353 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 600 | 634 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 564 | 594 | IPR002885 | - | |
| Vvi17g544 | 764 | PANTHER | OS07G0101200 PROTEIN | 1 | 723 | - | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 284 | 318 | IPR002885 | - | |
| Vvi17g544 | 764 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 110 | 144 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g544 | - | - | - | vvi:100253631 | 1555.81 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g544 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone13ag0073 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008959 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 3 | 1 | 1 | 30 |