Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g545 | ATGACTTCTTTCATCCACAAAAAACTCCAGAGCAACATCTTACCTTCCGCCTGCAGATCCATATCCTCGCTCGCAGTCACTGAAAACTCAGAAAATTTTCATAGCACACATGACACAGTTCTTCCACCATTTGACCCTTTTCACTTTTTCAGTGATTATACAAAATCAGGACGATGCACCCTCAGAAATACAAAGATCTTGCATGCCCATTTTCTCAAAACTGCTATTTTACAATCCAACACCTTCATGACCAATTCTTTGATGGGTTGGTATTGTAAATCCAATTCCATGGTTCATGCACTCAGATTGTTTGATAAAACTCCTCACCCAAATGTTATTTCTTGGAATATTTTGATTTCAGGTTGCAACCAGAACTTTTCATTTGAGGATTCGTGGAGGAATTTTTGTAAGATGCGTTTTTCAGGATTTGATCCCAACCAGTTCACCTATGGGAGTGTTCTTTCGGCTTGTACTGCCTTAGGGTCTCCTTTGTATGGTGAACTGGTATATTCACTTGCACTGAAAAATGGGTTCTTCTCAAATGGGTATGTTCGGGCTGGAATGATTGATTTGTTTGCGAAGCTTTGTAGCTTTGAGGATGCTTTAAGGGTGTTTCAAGACGTTTTATGTGAGAACGTGGTTTGCTGGAATGCTATCATTTCTGGGGCTGTTAAAAATAGGGAAAATTGGGTTGCTTTAGATCTTTTCTGCCAAATGTGCTGCAGATTTTTTATGCCAAATAGTTTTACGTTTTCAAGCATTTTAACAGCTTGTGCTGCACTTGAGGAACTTGAGTTTGGAAGAGGGGTTCAAGGATGGGTGATTAAATGTGGTGCAGGAGAAGATGTTTTTGTGGGGACTGCCATCATTGATTTGTATGCCAAATGCAGGGATATGGATCAAGCTGTGAAGGAATTTTTGCGAATGCCAATCCGCAATGTAGTTTCCTGGACTACCATCATTTCTGGTTTTGTTCAGAAGGATGACAGTATTTCTGCTTTCCACTTCTTCAAAGAAATGAGAAAAGTAGGAGAGAAAATAAACAACTACACCATAACTAGTGTACTTACTGCTTGTACTGAGCCAGTTATGATCAAAGAGGCAGTCCAACTACATTCCTGGATTTTCAAAACTGGGTTCTATTTGGATTCCAATGTAAGTTCTGCTTTGATCAATATGTATTCAAAAATAGGAGTGGTTGACTTATCTGAGAGGGTGTTCAGAGAGATGGAAAGTACAAAGAACCTAGCCATGTGGGCTGTTATGATATCTGCCTTTGCTCAAAGTGGGAGTACTGGAAGGGCAGTTGAATTGTTTCAGAGGATGCTTCAGGAGGGTCTGAGACCTGATAAGTTTTGTAGTTCTAGTGTCTTGAGCATAATAGACAGTCTAAGTTTGGGGAGACTGATCCATTGCTACATTCTTAAAATTGGTTTGTTCACTGATATTTCTGTGGGCAGTTCTCTTTTCACAATGTACTCAAAATGTGGTAGTTTAGAGGAATCTTACACAGTTTTTGAGCAAATGCCTGACAAAGACAATGTTTCATGGGCCTCCATGATCACTGGGTTTTCAGAACATGACCATGCAGAACAAGCTGTTCAGTTGTTCAGAGAGATGCTGTTAGAAGAAATTAGACCAGATCAAATGACTTTAACTGCAGCTCTAACTGCATGTTCTGCTCTTCATTCCTTAGAAAAAGGAAAGGAAGTTCATGGGTATGCTCTTCGAGCACGAGTTGGCAAAGAGGTACTTGTGGGTGGTGCACTTGTAAATATGTACTCAAAATGTGGTGCCATAGTCTTGGCAAGGAGGGTATTTGACATGCTCCCCCAAAAGGATCAGTTTTCATGCTCCTCCTTGGTTTCAGGATATGCTCAAAATGGGTATATTGAAGATGCACTTCTGCTGTTCCATGAAATACGGATGGCTGATTTGTGGATTGACTCCTTCACAGTTTCATCTGTCATTGGGGCTGTAGCAATTTTAAACAGCTTAGACATTGGTACCCAACTGCATGCTTGTGTTACAAAAATGGGCTTAAATGCAGAAGTTTCTGTTGGCAGCTCTCTAGTTACAATGTATTCAAAATGTGGAAGCATTGACGAATGTCATAAGGTGTTTGAACAGATTGAAAAACCTGATTTGATCAGTTGGACGGCTATGATAGTGAGCTATGCTCAGCATGGAAAAGGTGCAGAGGCTTTAAAAGTGTATGACCTCATGAGGAAAGAAGGAACTAAACCTGATTCAGTAACATTTGTTGGTGTCTTATCTGCATGTAGTCATAATGGTATGGTTGAAGAAGGCTATTCCCATCTAAATTCAATGGCCAAAGAGTATGGAATTGAACCTGGTTACTACCATTATGCCTGTATGGTTGATCTTCTTGGGCGATCTGGAAGGCTGAAAGAGGCTGAAAGGTTCATTAACAATATGCCCATTGAACCTGATGCTTTGCTATGGGGAATATTGCTTGCTGCTTGCAAGGTACATGGGGATATTGAGCTTGGAAGGCTAGCGGCAAAAAGAGTCATTGAGTTGGAGCCCTGTGAAGCTGGAGCTTATGTCACCTTGTCAAACATCTGTGCAGATATGGGCTGGTGGGAAGATGTCATGAAGATCAGAAGCCTGATGGAGGGAACTGGGGTGAAGAAGGAACCTGGATGGAGTTCTGTGTGA | 2682 | 41.01 | MTSFIHKKLQSNILPSACRSISSLAVTENSENFHSTHDTVLPPFDPFHFFSDYTKSGRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSSV* | 894 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 6668794 | 6671476 | - | Vvi17g545 | Vvi17g545 | 779242 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 616 | 643 | IPR002885 | - | |
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 515 | 548 | IPR002885 | - | |
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 717 | 751 | IPR002885 | - | |
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 418 | 450 | IPR002885 | - | |
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 113 | 146 | IPR002885 | - | |
| Vvi17g545 | 893 | TIGRFAM | PPR: pentatricopeptide repeat domain | 315 | 348 | IPR002885 | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 614 | 648 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 84 | 106 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 789 | 813 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 418 | 447 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 689 | 712 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 617 | 643 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat | 388 | 412 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat family | 714 | 762 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat family | 312 | 359 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat family | 212 | 259 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat family | 512 | 559 | IPR002885 | - | |
| Vvi17g545 | 893 | Pfam | PPR repeat family | 110 | 157 | IPR002885 | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 111 | 145 | IPR002885 | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | IPR002885 | - | |
| Vvi17g545 | 893 | PANTHER | - | 166 | 568 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 306 | 644 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 60 | 239 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 552 | 681 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 620 | 891 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 166 | 568 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 620 | 891 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 60 | 239 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 306 | 644 | - | - | |
| Vvi17g545 | 893 | PANTHER | - | 552 | 681 | - | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 415 | 449 | IPR002885 | - | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 666 | 778 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 779 | 892 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 750 | 785 | IPR002885 | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 715 | 749 | IPR002885 | - | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 364 | 465 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 468 | 568 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 25 | 166 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 167 | 266 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 273 | 363 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Gene3D | Tetratricopeptide repeat domain | 569 | 665 | IPR011990 | GO:0005515 | |
| Vvi17g545 | 893 | Pfam | E motif | 832 | 893 | IPR046848 | - | |
| Vvi17g545 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 513 | 547 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g545 | - | - | - | vvi:100248528 | 1795.79 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g545 | . | Blo16g00187 | . | . | . | Bpe13g00289 | Bma06g00176 | . | Cmo13g01182 | . | . | . | . | . | . | Cpe20g00022 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa01g00539 | Chy12g01549 | . | . | . | . | . | . | . | . | . | . | . | . | Cma13g01128 | . | Car13g00963 | . | . | . | . | . | . | . | . | . | . | Cla04g01204 | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012059 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 26 |