Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g546 ATGGGAGAGGAAAACAAAGTGACGTTATATGGAATGTGGGCTAGTCCTTTCGTCAAGAGGGTTGAAATTGCCCTCAAAATTAAAGGCATACCTTATGAGTATGTAGAAGAAGATTTGAGAAACAAAAGCCAGTTGCTCCTCCAGTACAATCCTGTCCACAAGAAGGTTCCTGTACTTGTCCACAATGGAAAACCCATTACTGAATCATTGGTCATCCTTGAATATATTGAAGAAACCTGGAAGAATGGTCCTAAACTTCTTCCTGAGGATCCCTATGAAAGGGCCAAAGTTCGCTTCTGGGCTAGCTTTATCCAGCAACAGTTTGTTGATAGCATGGTCTCAGCAGCAAAAAGCAGTGGGGAAGCGCATGAGAAAGCCATGAAGGAAGCGTTTGAGAAAATGACTGTTTTTGAAGAGGGAATGAAGGACTTCTTTCCAAGTGGCACTCCTCATTTTGAAGATGAGAATATTGGTTTCCTGGACATTGTATTGTGTTCGCTGTTTGGCCCCCACAAAGCTCAAGAAGAAGCCCTTGGTCTGAAGATCATTGATCCAGAAAGGCATCCACTGCATGACCTCGAGATTCAAGCATCACATTTGAGAGAGATGGAAGAGGAAAACCAAATTAAGCTACATGGAATGTGGGGTAGCACTTTCACTAAGAGGGTAGAGCTAGCCCTCAAAATTAAGGGCATACCCTATGAGTATATTGAAGAAGATTTGAGCAACAAGAGCCAATTGGTCCTCAAGTACAATCCTGTTCACAAGAAGGTTCCTGTCCTTGTGCACAATGGAAAACCCATCATTGAGTCTCTCATCATTCTTGAATATATCGATGAAACCTGGAAGAATGCTCCCCGGTTGCTGCCTGATGATCCCTATGAAAGAGCTAAAGTTCGCTTCTGGGCCAGTTTTTTCCATCAACAGTTGTTTGAGGATATGGGTCGAGTAATCACATCTGATGGAGAAGCACAAGAGAAAGCCACAAAGGACTTGTTTGAGAAGCTGACAGTTTTGGAAGAGGGAATGAAGGATTTCTTTCCAGGGGGCACTCCTTCCATTAATGGTGAAAACATGGGACTCCTGGACATTCTAATGTGTGCATTATTTGGTCCGTACAAAGCTCATGAAGAAGTCCTGGGAATGAAGATGATCGACCCAGAAAGGAACCCACTGTTATTCTCATGGGTGATGGCTATAACGGAGATACCTGTGGTGCAAGAGTCAACCCCTCCTCATGAGAAACTCGTGGGCCTTGTTCAGTTTATCAGACAGCATGCTCTTCAGTCCTGTGTGGCTTGA 1302 43.93 MGEENKVTLYGMWASPFVKRVEIALKIKGIPYEYVEEDLRNKSQLLLQYNPVHKKVPVLVHNGKPITESLVILEYIEETWKNGPKLLPEDPYERAKVRFWASFIQQQFVDSMVSAAKSSGEAHEKAMKEAFEKMTVFEEGMKDFFPSGTPHFEDENIGFLDIVLCSLFGPHKAQEEALGLKIIDPERHPLHDLEIQASHLREMEEENQIKLHGMWGSTFTKRVELALKIKGIPYEYIEEDLSNKSQLVLKYNPVHKKVPVLVHNGKPIIESLIILEYIDETWKNAPRLLPDDPYERAKVRFWASFFHQQLFEDMGRVITSDGEAQEKATKDLFEKLTVLEEGMKDFFPGGTPSINGENMGLLDILMCALFGPYKAHEEVLGMKMIDPERNPLLFSWVMAITEIPVVQESTPPHEKLVGLVQFIRQHALQSCVA* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6686592 6693719 + Vvi17g546 Vvi17g546 779243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g546 433 CDD GST_C_Tau 91 190 IPR045074 GO:0004364|GO:0006749
Vvi17g546 433 CDD GST_N_Tau 209 282 - -
Vvi17g546 433 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Vvi17g546 433 SFLD Glutathione Transferase (cytosolic) 205 428 IPR040079 -
Vvi17g546 433 SFLD Main.3: Omega- and Tau-like 205 428 IPR045073 -
Vvi17g546 433 SFLD Main.3: Omega- and Tau-like 4 189 IPR045073 -
Vvi17g546 433 Gene3D Glutaredoxin 1 86 - -
Vvi17g546 433 Gene3D Glutaredoxin 205 288 - -
Vvi17g546 433 CDD GST_C_Tau 293 423 IPR045074 GO:0004364|GO:0006749
Vvi17g546 433 SUPERFAMILY Thioredoxin-like 208 310 IPR036249 -
Vvi17g546 433 SUPERFAMILY GST C-terminal domain-like 280 425 IPR036282 -
Vvi17g546 433 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Vvi17g546 433 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 207 286 IPR004045 -
Vvi17g546 433 CDD GST_N_Tau 7 80 - -
Vvi17g546 433 Gene3D - 289 431 - -
Vvi17g546 433 Gene3D - 87 204 - -
Vvi17g546 433 ProSiteProfiles Glutaredoxin domain profile. 1 94 - -
Vvi17g546 433 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 203 427 IPR045073 -
Vvi17g546 433 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 190 IPR045073 -
Vvi17g546 433 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 1 190 - -
Vvi17g546 433 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 203 427 - -
Vvi17g546 433 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 292 430 IPR010987 -
Vvi17g546 433 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 229 IPR010987 -
Vvi17g546 433 SUPERFAMILY GST C-terminal domain-like 78 185 IPR036282 -
Vvi17g546 433 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Vvi17g546 433 Pfam Glutathione S-transferase, N-terminal domain 208 280 IPR004045 -
Vvi17g546 433 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g909 Vvi17g546 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g546 K00799 - vvi:100250043 472.626