Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g549 ATGAACCATACCCAACATCTCTGCAGTTCTTTGTTGACAAACTGTAGGAGCCTCAAGAACCTCAAGCAAGTCCACGCCTATGTATGCAAGACCGGCCTCGACACCGATCCCATCATCGCTGGAAAACTCCTCCTCCATTCCGCCGTCTCCGTCCCGGATGCGCTCGACTATGCTCGCCGCCTTTTCCTTCATTTTCCCAATCCAGATGTTTTCATGCACAATACCCTCATCCGAGGTCTCGCCGAGTCTGATACTCCACAAAACTCCCTCATTACATTCGTTGAAATGCGTCGCCGATTGACAGCGCCGCTTGATAGTTTTTCGTTTGCTTTCCTTCTCAAAGCGGCTGCGAGTTATCGGTCTCTGGAATCTGGGATTCAGTTGCATTGTCAAGCTATTGTGCATGGACTCGATACCCATCTCTTTGTTGGGACCACTCTTGTAAGTATGTACTCGGAATGCGGATTTGTCGCTTTTGCGAAGAAGGTGTTTGAGGAAATGTTTGAACCAAATGTTGTTGCTTGGAATGCGGTGGTTACTGCGTGTTTTAGGTGCGGAGATGTGAAGGAAGCAATACAACTTTTCCATGAGATGGAGGAATCTGGGATAAGGCCTGACGGGATTGCCTTCATTTCCATTCTATATGCTTGTAGTCATGCTGGATTGATTGAAAAAGGGTATGAGTATTTTTATAAAATGAAGGACATATATAATATAGAACCAGCCATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGTGCTGGTCAGCTAGATAAGGCTTATGAATTCATAATCCATATGCCTGTTTTGCCAACTGCCATTATTTGGAGGACACTTCTTGGGGCTTGCAGCATTCATGGAAATGTTAAATTGGCAGAGCGTGTAAAGGAAAGGCTTTCTGAGCTTGATCCCAACAACTCTGGTGACCATGTTCTGTTGTCAAATATATATGCAGTTGCAGGGAAATGGAAGGATGTTGCTGCTGTGAGAAGATCAATGACTGATCAGAGGATGAATAAAACCCCTGGTTGGAGCATGATTGAAGTTGACAAAATCATGTATAGTTTTGTGGCAGGTGAAGTACAGAATAGTATTACAGAAGAGGCTTATGAGAAGCTAAAAGAAATAATGTTGAAGCTTAGGGTTGAAGGGTGTTACATTCCAGAGGTTGGGAGTGTTTTACATGACATAGAAGACGAAGAAAAAGAAGATTCAGTTTCTAGGCACAGTGAGAAGCTTGCTGTTGCTTTTGGGATAGCAAGATTGTGCAAGGGAAGTATCATAAGAATAGTGAAGAACTTGAGGGTTTGCAGGGACTTGGTGATTGATGAAGTTATTAGACATGTATTTGGAAAGGAATCCATGGCTCCAAGAGGATTCAACTTTGAAGAACTGAAAACAGAAAGTAAAAGACATTTCATGCCCTTTGTTTTGGTAGAAGGTGAGTATGTTTTGGTCTGTGGTCTCTAG 1476 43.16 MNHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDLVIDEVIRHVFGKESMAPRGFNFEELKTESKRHFMPFVLVEGEYVLVCGL* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6737152 6740262 + Vvi17g549 Vvi17g549 779246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g549 491 Gene3D Tetratricopeptide repeat domain 209 381 IPR011990 GO:0005515
Vvi17g549 491 Gene3D Tetratricopeptide repeat domain 1 169 IPR011990 GO:0005515
Vvi17g549 491 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Vvi17g549 491 Pfam E motif 288 350 IPR046848 -
Vvi17g549 491 PANTHER - 11 190 - -
Vvi17g549 491 PANTHER - 189 420 - -
Vvi17g549 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Vvi17g549 491 Pfam PPR repeat family 170 217 IPR002885 -
Vvi17g549 491 PANTHER OS01G0913400 PROTEIN-RELATED 11 190 - -
Vvi17g549 491 PANTHER OS01G0913400 PROTEIN-RELATED 189 420 - -
Vvi17g549 491 Pfam PPR repeat 145 169 IPR002885 -
Vvi17g549 491 Pfam PPR repeat 245 269 IPR002885 -
Vvi17g549 491 Pfam DYW family of nucleic acid deaminases 388 442 IPR032867 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g549 - - - vvi:100243404 557.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g919 Vvi17g549 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29