Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g556 ATGTTTGATCACTTCTTCAAGTTTCTGCATTACTGGCCTGCTAATCTTGATGTCAATAAGTATGAGCACATGATGTTGCTGGACTTGCTGAAGAAGGGCCATACCGAACCAGACAAAAAGATTGGCGGGGGGATCCATGCTTTCCAAGTCCGATACCATCCAGTGTTTAAAAGTCGCTGCTTCTTCGTCATAAGGGATGATGAGTCTGTTGATGATTTCAGCTTCAGGAAATGCGTGGATCACATATCGCCCTTGCCTGAAAACATGAAAGCAAAATCTGAGGTCAATAAGGCACTGGGTGGAGGCCGTGGAGGAAAAGGTGGTGGCGGTGGTGGAAGAGGAGGTGGCCGCGGCCGTGGTGGAAGAGGAGGTAGAGGAAGAAACTAA 387 48.32 MFDHFFKFLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDDESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGGRGGKGGGGGGRGGGRGRGGRGGRGRN* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6795548 6797879 + Vvi17g556 Vvi17g556 779253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g556 128 MobiDBLite consensus disorder prediction 90 128 - -
Vvi17g556 128 PANTHER - 1 113 IPR044673 -
Vvi17g556 128 PANTHER PROTEIN EMBRYO DEFECTIVE 514 1 113 - -
Vvi17g556 128 Gene3D - 1 83 - -
Vvi17g556 128 Pfam Protein of unknown function (DUF3223) 7 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g556 - - - vvi:100255290 214.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g556 . . . . . . Bma06g00170 . . . Cma10g00190 Cma11g00144 Car10g00180 Car11g00150 Sed08g0214 . Cpe04g01500 Bhi02g00326 Tan09g2124 Cmetu02g0201 . Hepe09g0121 . . Cla06g01592 Cam06g1765 Cec06g1818 Cco06g1824 Clacu06g1728 Cmu06g1672 Cre06g2488 Cone2ag0844 Cone16ag0171 . . . . . . . . . Bda14g00853 . . . . . Cmo10g00207 Cmo11g00165 . . . . . Cpe18g00795 . . . . . . . . . . . . . . Lsi06g01465 Csa01g00233 Chy02g02499 Cme02g01885
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006381 1 1 1 1 0 1 3 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37