Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g557 ATGGAGAGCTTTCCAACTGACCCTTTGTATTCTCCTCTTGATATTATTCCAAGCCCAGCAGTAATTCAAGAGGATTTTGGCTGTGGTTATGGAAATGAGTTGGGAGGTTGGAATGAAGTGAACCCTGCGTTTGATCATGAGAAACAACCCTTCTTGTTATGTGATAAGAATGGTCGACAGACTGAGGAGGAGTCTACCAAAGAAAACAAAGAGACCAGAAAAGGCAGAGATGAAAAGAGTAACAGTTCAAAAATGTTATCTCGAAACACTATTTCTCAGTACTTCTACATGCCCATAACCCAAGCAGCCAGGGAGCTTAAAGTGGGCTTAACACTTCTGAAGAAAAGGTGTAGGGAGTTGGGTATTCGTAGATGGCCTCATAGAAAGTTAATGAGCCTCCAAACCCTAATCAAGAACGTTCAGGAATTGGGAAAAGATGAGGGCGATGGGAGTGATCAGGGAAAGTTAAGAGAAGCCATCCAGATACTAGAGCAAGAGAGGAAGTTGATGGAGGAGATGCCAGATTTGCAACTCGAAGACAAGACAAAGAGGCTTAGACAAGCCTATTTCAAGGCAAACTACAAGAAGAGAAAGCTCATGGGCACGATGGATTCTTCCCAATCTTCCTCCAACAGCAACCCTCAAACAGTGGAGGTTGCCATGAATTATACAACCATGGATGAAGAAGATGAAATGAAGTCTCTCTTGTCTGACTCTTTCTCTTCTACTAACATGATGTTCAGGGGTTTTATCTGTACCGGGAAATGCGACGGCGAGATTCATGCTAGGATTTTGAGAGATGGGCATCAATCTGATAATCTTTTGCTCACTACTTTGATGGACTTGTATTCATGCTGTGATAAGTTTGAAGAAGCATGCAAGGTGTTTGATGAGATACCTCAGTGGGACACCGTTTCATGGAATGTATTGATTTCTTGCTGCATTCACAATAGGCGGACCCGGGATGCTCTGAGAATGTTTGATATTATGCAGAGCACAGCGGATGGGTTTGAACCGGATGATGTTACTTGCTTGCTTCTCCTTCAAGCTTGTGCTAACTTGGGTGCATTAGAGTTCGGTGAACGGGTTCATAATTATATTGAAGAACATGGATATGATGTGCATGAGTTTGTGGTGGATGATATTTTACATCCTCGGACTGATGAAATTTATGAGATGCTGGATGAGATTGGAAAGCAACTGAAGATTGCTGGTTATGTTGCTGAATTATCATCGGAATTGCACAATTTGGGTGCTGAAGAAAAGGGAAATAGGTTGTCCTATCATAGTGAGAAGTTGGCCATTGCTTTTGGAGTCCTTGCAACTCCACCAGGCACGACAATTAGGGTGGCCAAGAACCTGCGAATCTGTGTTGACTGTCACAATTTTGCAAAGGTCCTTTCAGGGGCTTATAATCGTGAGGTGGTTATAAGAGATCGCACACGGTTTCATCATTTCCGAGAAGGGCAGTGCTCTTGCAATGGCTACTGGTAG 1494 43.17 MESFPTDPLYSPLDIIPSPAVIQEDFGCGYGNELGGWNEVNPAFDHEKQPFLLCDKNGRQTEEESTKENKETRKGRDEKSNSSKMLSRNTISQYFYMPITQAARELKVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELGKDEGDGSDQGKLREAIQILEQERKLMEEMPDLQLEDKTKRLRQAYFKANYKKRKLMGTMDSSQSSSNSNPQTVEVAMNYTTMDEEDEMKSLLSDSFSSTNMMFRGFICTGKCDGEIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6799122 6802702 + Vvi17g557 Vvi17g557 779254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g557 497 Pfam PPR repeat family 303 353 IPR002885 -
Vvi17g557 497 Pfam PPR repeat 277 300 IPR002885 -
Vvi17g557 497 MobiDBLite consensus disorder prediction 56 85 - -
Vvi17g557 497 ProSiteProfiles RWP-RK domain profile. 67 154 IPR003035 -
Vvi17g557 497 Gene3D Tetratricopeptide repeat domain 240 425 IPR011990 GO:0005515
Vvi17g557 497 PANTHER BNAA06G20590D PROTEIN 375 483 - -
Vvi17g557 497 PANTHER BNAA06G20590D PROTEIN 196 373 - -
Vvi17g557 497 MobiDBLite consensus disorder prediction 56 83 - -
Vvi17g557 497 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 373 - -
Vvi17g557 497 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 375 483 - -
Vvi17g557 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 333 IPR002885 -
Vvi17g557 497 Coils Coil 153 173 - -
Vvi17g557 497 Pfam RWP-RK domain 86 133 IPR003035 -
Vvi17g557 497 Pfam DYW family of nucleic acid deaminases 405 497 IPR032867 GO:0008270
Vvi17g557 497 TIGRFAM PPR: pentatricopeptide repeat domain 305 340 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g557 - - - vvi:100253640 488.419
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g557 . 73 209 AtRKD Transcription Factor Family AT1G18790 62.9 1.9e-37 153.3
Vvi17g557 . 80 242 AtRKD Transcription Factor Family AT1G74480 53.3 2.1e-37 153.3
Vvi4g1190 . 2 136 AtRKD Transcription Factor Family AT4G35590 69.1 8.1e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14211 PF14432 DYW_deaminase 4.00E-33 CL0109 Vvi TF