Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g557 ATGGAGAGCTTTCCAACTGACCCTTTGTATTCTCCTCTTGATATTATTCCAAGCCCAGCAGTAATTCAAGAGGATTTTGGCTGTGGTTATGGAAATGAGTTGGGAGGTTGGAATGAAGTGAACCCTGCGTTTGATCATGAGAAACAACCCTTCTTGTTATGTGATAAGAATGGTCGACAGACTGAGGAGGAGTCTACCAAAGAAAACAAAGAGACCAGAAAAGGCAGAGATGAAAAGAGTAACAGTTCAAAAATGTTATCTCGAAACACTATTTCTCAGTACTTCTACATGCCCATAACCCAAGCAGCCAGGGAGCTTAAAGTGGGCTTAACACTTCTGAAGAAAAGGTGTAGGGAGTTGGGTATTCGTAGATGGCCTCATAGAAAGTTAATGAGCCTCCAAACCCTAATCAAGAACGTTCAGGAATTGGGAAAAGATGAGGGCGATGGGAGTGATCAGGGAAAGTTAAGAGAAGCCATCCAGATACTAGAGCAAGAGAGGAAGTTGATGGAGGAGATGCCAGATTTGCAACTCGAAGACAAGACAAAGAGGCTTAGACAAGCCTATTTCAAGGCAAACTACAAGAAGAGAAAGCTCATGGGCACGATGGATTCTTCCCAATCTTCCTCCAACAGCAACCCTCAAACAGTGGAGGTTGCCATGAATTATACAACCATGGATGAAGAAGATGAAATGAAGTCTCTCTTGTCTGACTCTTTCTCTTCTACTAACATGATGTTCAGGGGTTTTATCTGTACCGGGAAATGCGACGGCGAGATTCATGCTAGGATTTTGAGAGATGGGCATCAATCTGATAATCTTTTGCTCACTACTTTGATGGACTTGTATTCATGCTGTGATAAGTTTGAAGAAGCATGCAAGGTGTTTGATGAGATACCTCAGTGGGACACCGTTTCATGGAATGTATTGATTTCTTGCTGCATTCACAATAGGCGGACCCGGGATGCTCTGAGAATGTTTGATATTATGCAGAGCACAGCGGATGGGTTTGAACCGGATGATGTTACTTGCTTGCTTCTCCTTCAAGCTTGTGCTAACTTGGGTGCATTAGAGTTCGGTGAACGGGTTCATAATTATATTGAAGAACATGGATATGATGTGCATGAGTTTGTGGTGGATGATATTTTACATCCTCGGACTGATGAAATTTATGAGATGCTGGATGAGATTGGAAAGCAACTGAAGATTGCTGGTTATGTTGCTGAATTATCATCGGAATTGCACAATTTGGGTGCTGAAGAAAAGGGAAATAGGTTGTCCTATCATAGTGAGAAGTTGGCCATTGCTTTTGGAGTCCTTGCAACTCCACCAGGCACGACAATTAGGGTGGCCAAGAACCTGCGAATCTGTGTTGACTGTCACAATTTTGCAAAGGTCCTTTCAGGGGCTTATAATCGTGAGGTGGTTATAAGAGATCGCACACGGTTTCATCATTTCCGAGAAGGGCAGTGCTCTTGCAATGGCTACTGGTAG 1494 43.17 MESFPTDPLYSPLDIIPSPAVIQEDFGCGYGNELGGWNEVNPAFDHEKQPFLLCDKNGRQTEEESTKENKETRKGRDEKSNSSKMLSRNTISQYFYMPITQAARELKVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELGKDEGDGSDQGKLREAIQILEQERKLMEEMPDLQLEDKTKRLRQAYFKANYKKRKLMGTMDSSQSSSNSNPQTVEVAMNYTTMDEEDEMKSLLSDSFSSTNMMFRGFICTGKCDGEIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6799122 6802702 + Vvi17g557 Vvi17g557 779254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g557 497 Pfam PPR repeat family 303 353 IPR002885 -
Vvi17g557 497 Pfam PPR repeat 277 300 IPR002885 -
Vvi17g557 497 MobiDBLite consensus disorder prediction 56 85 - -
Vvi17g557 497 ProSiteProfiles RWP-RK domain profile. 67 154 IPR003035 -
Vvi17g557 497 Gene3D Tetratricopeptide repeat domain 240 425 IPR011990 GO:0005515
Vvi17g557 497 PANTHER BNAA06G20590D PROTEIN 375 483 - -
Vvi17g557 497 PANTHER BNAA06G20590D PROTEIN 196 373 - -
Vvi17g557 497 MobiDBLite consensus disorder prediction 56 83 - -
Vvi17g557 497 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 373 - -
Vvi17g557 497 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 375 483 - -
Vvi17g557 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 333 IPR002885 -
Vvi17g557 497 Coils Coil 153 173 - -
Vvi17g557 497 Pfam RWP-RK domain 86 133 IPR003035 -
Vvi17g557 497 Pfam DYW family of nucleic acid deaminases 405 497 IPR032867 GO:0008270
Vvi17g557 497 TIGRFAM PPR: pentatricopeptide repeat domain 305 340 IPR002885 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14211 PF14432 DYW_deaminase 4.00E-33 CL0109 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g557 - - vvi:100253640 488.419