Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g558 ATGGCAGCAACATCGTTGACTACAATTACAATCGGATCATCTGCCTCAATTGGCTCAAAAGCAATCCCACTTTCACGGTCAAAGTGTTTTGGTGTGTCATTCAACTCTCAGAACTATCTTAAGAAGGCATCCTTCTTAGGCAAGGAAAGTAGTGCAGCTCTTCGGAACTCTTTTGCACCAAAAGCTGGAAAGCAAAACCTGAGGCATCAGTACTACCTACAGCCCCAGGCCTCATCGTCCAAAGTGGCAATTCTTGGAGCTGCTGGAGGGATAGGTCAGCCCCTAGCACTCCTAATCAAGATGTCCCCATTAGTTTCTGCACTTCACCTTTATGATATAGCAAATGTTAAGGGAGTTGCTGCTGATCTCAGTCACTGCAATACTCCTGCTCAAGTGCTGGACTTTACAGGAACTTCTGAATTAGCCAATTCTTTGAAAGGTGTGGACGTGGTTGTTATACCTGCAGGAGTTCCGAGAAAGCCAGGTATGACCCGTGATGACCTCTTCAACATCAATGCCAACATAGTGAAGACCTTGGTTGAGGCTGTTGCTGACAACTGCCCTGATGCCTTCATCCATATTATCAGCAATCCAGTTAATTCTACAGTGCCCATCGCTGTGGAAGTTTTGAGGCGGAAGGGTGTCTATGATCCAAAGAAGGTTTTTGGTGTTACTACACTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAACCTTAGGCTCATTGATCCCTCAGTAAGTTTCACTGATGAAGAAGTGGAAGAACTAACTGTTAGAATCCAAAATGCTGGAACAGAAGTTGTGGAGGCAAAGGCAGGAGCAGGGTCTGCTACACTGTCAATGGCATATGCAGCAGCAAGATTCGTTGAGTCATCCCTCCGTGCACTGGATGGGGACACGGATGTCTATGAGTGCGCCTATGTACAGTCGGAGCTGACTGAGCTTCCTTTCTTTGCCTCAAGGGTTAAGATTGGAAAGAAAGGGATTGAAGCCGTGATTTCTAGTGACCTCCAAGGATTGACTGAGTATGAAGAGAAGGCTTTGGAAGCCCTCAAGCCAGAACTGAAGGCCAGTATTGAGAAGGGGGTGGCTTTTGCACAAAAGCAAACAGTGACAGCTTAA 1131 46.33 MAATSLTTITIGSSASIGSKAIPLSRSKCFGVSFNSQNYLKKASFLGKESSAALRNSFAPKAGKQNLRHQYYLQPQASSSKVAILGAAGGIGQPLALLIKMSPLVSALHLYDIANVKGVAADLSHCNTPAQVLDFTGTSELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAVEVLRRKGVYDPKKVFGVTTLDVVRANTFVAQKKNLRLIDPSVSFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDTDVYECAYVQSELTELPFFASRVKIGKKGIEAVISSDLQGLTEYEEKALEALKPELKASIEKGVAFAQKQTVTA* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6803426 6806485 - Vvi17g558 Vvi17g558 779255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g558 376 SUPERFAMILY LDH C-terminal domain-like 224 369 IPR015955 GO:0003824|GO:0016616
Vvi17g558 376 CDD MDH_glyoxysomal_mitochondrial 81 369 IPR010097 GO:0006099|GO:0030060
Vvi17g558 376 Gene3D - 77 224 - -
Vvi17g558 376 Gene3D - 242 374 IPR015955 GO:0003824|GO:0016616
Vvi17g558 376 Pfam lactate/malate dehydrogenase, NAD binding domain 81 223 IPR001236 GO:0016491
Vvi17g558 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 224 IPR036291 -
Vvi17g558 376 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 42 249 - -
Vvi17g558 376 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 247 376 - -
Vvi17g558 376 ProSitePatterns Malate dehydrogenase active site signature. 224 236 IPR001252 GO:0006108|GO:0016615
Vvi17g558 376 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 246 368 IPR022383 GO:0016616
Vvi17g558 376 PANTHER MALATE AND LACTATE DEHYDROGENASE 247 376 - -
Vvi17g558 376 PANTHER MALATE AND LACTATE DEHYDROGENASE 42 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g558 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - vvi:100265585 675.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1549 Vvi17g558 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50