Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g559 ATGGCCTCCATTTCCCTCAAAACCTTCGTCGGACTCCGTCAGTCCTCATCGGACACTTACAATTCCGGCCATGTTTTCCCCGTCAAGCATCTTCCTGCTCAACCCGCTTCCCGGGGTCTCCGCATTGTTGCTGGTAAGTTCAGCCCCAAGTTCGATCTTCCTTTGGACATCATCGACCGGCGTCCCCACGAGTACATCGGAATGGTTCGCCGCGAAGTCCTCGATTCCTATCTGCGGGAGCGTGCTTCCGCCTCCGGAGCCACCGTGGACGCCGTCATCGGCGCTGACGGTGCCAACTCGCGGGTGGCGAAGTTCATCGGCGCCGGTGATTACGACTACGCGATTGCCTTTCAGGAGAGAATTAAAATCCCGGACGACAAAATGGTGTACTACGAGAATTTGGCTGAAATGTACGTCGGTGACGACGTGTCGCCGGACTTTTACGGGTGGGTGTTCCCGAAATGCGACCACGTAGCCGTAGGCACCGGCACGGTGACCCACAAATCAGACATTAAGAAGTTTCAGCTAGCTACTCGGCTAAGAGCCAAGGAGAAGATACTGGGTGGAAAGATCATCCGTGTGGAGGCCCACCCTATTCCTGAACACCCTCGCCCTCGCAGGTTAGCGGGGAGAGTTGCTCTGGTGGGAGATGCAGCAGGGTATGTCACCAAATGCTCCGGTGAAGGTATCTACTTTGCAGCAAAGAGTGGTAGAATGTGTGCAGAGGCGATAGTGGAGGGGTCAGAGAATGGGAAGAGGATGGTGGACGAGGGAGACCTAAGGAAGTATTTGGAGAAGTGGGATAAAACCTATTGGCCAACTTACAAGGTGTTGGATGTGCTGCAAAAGGTGTTCTATCGATCAAATCCAGCCAGGGAGGCCTTTGTGGAGATGTGCGCGGATGAGTATGTGCAGAAGATGACCTTTGACAGCTATTTGTATAAGAAGGTGGTACCCGGGAACCCATTGGAGGATTTGAAGCTGGCTGTGAATACTATCGGGAGCTTGGTGAGGGCCAATGCTCTTAGGAGGGAGATGGATAAGATGAGCGTATGA 1056 53.69 MASISLKTFVGLRQSSSDTYNSGHVFPVKHLPAQPASRGLRIVAGKFSPKFDLPLDIIDRRPHEYIGMVRREVLDSYLRERASASGATVDAVIGADGANSRVAKFIGAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKSDIKKFQLATRLRAKEKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKMSV* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6820942 6822833 + Vvi17g559 Vvi17g559 779256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g559 351 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 61 88 - -
Vvi17g559 351 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 88 350 - -
Vvi17g559 351 PANTHER OS01G0265000 PROTEIN 61 88 - -
Vvi17g559 351 PANTHER OS01G0265000 PROTEIN 88 350 - -
Vvi17g559 351 Gene3D - 88 350 IPR036188 -
Vvi17g559 351 TIGRFAM ChlP: geranylgeranyl reductase 89 338 IPR011774 GO:0045550
Vvi17g559 351 SUPERFAMILY FAD/NAD(P)-binding domain 49 300 IPR036188 -
Vvi17g559 351 TIGRFAM BchP-ChlP: geranylgeranyl reductase 88 338 IPR010253 GO:0015979|GO:0015995|GO:0045550
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g559 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - vvi:100243277 627.476
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g559 Blo04g00772 . . . . . . . . . Cma10g00194 . Car10g00184 Car11g00153 Sed08g0217 . Cpe04g01498 Bhi02g00313 Tan09g2119 Cmetu02g1781 . Hepe09g0116 . . . . . . . . . Cone2ag0842 . . . . . . . . . . Bda14g00854 . Bpe15g00600 . . . Cmo10g00209 Cmo11g00168 . . . . . Cpe18g00792 . . . . . . . . . . . . . . . Csa01g00237 Chy02g02495 Cme02g01881
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36