Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g56 ATGGCGACGCCGGAGGAGCATATAAAGGAGATAAGGAGGACGAAGTTCTCGATTGGAGGAGAGCTGAATCCGCTGACGGAGGATCTTCACCAGGCGGTGAAGAATCTCTCAGCTGAGCTTTACGCTAAGGATGTTCATTTCCTCATGGAACTCATTCAGAATGCAGAAGATAATGACTACCCGGAAGGTGTAAATCCATCACTGGAGCTCGTTATAACTTCACAGGACATAACTGGCACTGGAGCATCCGCGACATTGTTGATTTTCAACAACGAAAAAGGGTTTTCAGCTAAAAATATTGAGTCTATCTGCAGTGTTGGGAGGTCCACCAAGAAAAACAATAGGAAGTGTGGCTATATTGGAGAGAAAGGAATTGGGTTCAAGAGTGTATTTCTAATCACAGCACAACCTTACATATTCAGTAATGGATATCAGATACGATTCAATGAAGAGCCTTGCCCGCACAGCAATCTTGGGTACATAGTCCCTGAATGGGTTCAGTGGAATCCAACTCTTGATGACATAAAGCAAATATACGGTTCTCATGCAGTCCTTCCAACCACTACCATAATCTTGCCTCTAAAGCCTGACAAGATCGGCCCTGTGAAGGAACAGCTCTCAAGTATTCAACCTGAAGTTCTATTATTTCTTTCAAAGATTAAGCAGTTTTCTGTCAAGAAACATAATGAGGATCCCAGGCTCAATACGGTGAATGCTATATCTATTTCAACTAAGGATGTGACTGAAAAAGAATGCAGCTATTATATGTGGAGGCAGAAGTTCCCTGTCAGGCAGGAAAATCAAGTAGAAAGAAGACTTGGAGTGGAGGAGTTGGTTATTACGCTGGCATTTCCATTTGGACAGCGACTGAATAGAGGGATAAGCTCTCCAGGAGTCTATGCATTTCTTCCCACGGAGATGGTTACAAATTTTCCTTTCATTATTCAGGCAGATTTTGTTCTTGCATCATCCAGGGAAACAATCCTCTTGGACAACAAATGGAACCAAGGCATTCTAGATTGTGTGCCTTCTGCTTTTCTTAATGCCTTCATTTCACTGGTTACAACATCACAAGATGTTCCAGTCTCTACACTGACCCCAATGTTTAAGTTCTTGCCTATCTACAGCTCTCCTTATCCAAAGCTCAATGATGTGAGGGAGTTGATCAAAGCAGAACTGCTTAAGAAGAATATCGTACCATGGGTAAGTTTGCATTCTCTGTCATCCCATGGAAAGTATATTCTGAATTCTTCATTTGATACAGAGGAGTACGATCACATATTGAATTTCCTTGGTGTGGAACCTGTCAATAGCGAATGGTATGCCAAGTGTATCAAGAATCACTACGGCAAGGAAATCCTTCGTTTCAAAATGGAACTCCAATTGCTAGGTGTGGTAGTTGGCTTCAACAAAAATTACCAGCTTGTTACTGATCACTTAAAGTCTCAAGCATGCTCAAATCATCCAACAGCCGAGGCTATTCTTTTGATATTTGAATGCATGCGTGATTGTGAGCGCAATTCAAGATCAGCCCATAAACTTATACAGGCGCTTAAAGGTAATAAATGCTTGAAGACGAACATGGGCTACAAGTTTCCTAGTGAATGTTTCCTGTTTAATACTGAGTGGGATTCGCTTCTGAAAGTCTTCCATAATGATTTCCCACTTATTGATGAAGACTTCTATGGGACCAGCATCTTGTCTTACGAAAAAGAGTCGAGGCAAGCGGGAATAGTGGTGGATTTTGAAGCAGCGACTCAGAAATTTTTAGCTGTTTTCAAGAAGCATGCATCCTCATCACCGAGAGAGTGCATTCTTTTTGGCCCGGAGTGGGAACCTGTAAGTTCAATTACTGTGCTTCCTTTCATTGATGATAGTGACAAATTGTCAATGTCTTCAGGGGAAACCATGGCCGTTGATGCAAGACGAATGATGCGCTGGGACCGGGAGGATTCCAATCTTTTCATGCAGAAGATGGAGATATCGGGTGGACATAAAAATAAAATCGAATATGTGAATCGAGAAGGAGTAGTAATGGCGACGCCGAAAGAGCATATAGAAGAGATAAGGAGGACGAAGTTCTCGATCGGAGGAGAGCTGAATCCTCTGACGGAGGATCTTCACCAGGCGGTCAAGAATCTCTCTGCTGAGCTTTACGCTAAGGATGTTCATTTCCTCATGGAGCTCATTCAGAATGCAGAAGATAATGAGTACGGGGAAGGAGTGAATCCATCGCTGGAGCTAGTTATAACTTCACAGGACATAACAGACACTGGAGCACCGGCGACATTGTTGATTTTCAATAACGAGAAGGGGTTTTCAGCTAAAAACATAGAGTCTATATGCAGTGTTGGGAGGTCCACCAAGAAAAGCAACAGGAAGCAGGGTTATATTGGAGAGAAAGGAATTGGGTTCAAAAGTGTATTTTTGATCACAGCTCAGCCTTACATATTCAGTAATGGATATCAGATACGATTCAATGAAGAGCCTTGCTCGCACAGCAATCTTGGGTACATTGTCCCTGAATGGGTTGAGCAGAATCCAAGTCTTGCTGACATAAAACAAATATATGGTTCTCATGCTGTGCTTCCAACCACTACTATAATCTTGCCTCTAAAGCCAGACAAGATCAAACCTGTGAAGCAACAGCTCTCAAGTATTCAACCTGAAGTTCTATTATTTCTTTCAAAGATTAAGCACTATTATATGTGGAGGCAGAAGTTCCCTGTCAGGCAGGAAAATCAAGTAGAAAGAAGACTTGGAGTGGAGGAGTGGGTTATTAAGCTAGCATTTCCGATTGGACAGCGACTGAATAGGGGGATGAGCTCTCCTGGAATCTATGCATTTCTTCCTACGGAGATGGTTACAAATTTTCCTTTCATTATTCAGGCAGATTTTGTTCTTGCATCATCCAGGGAAACAATCCTCTTGGACAACAAATGGAACCAAGGCATTCTAGATTGTGTGCCTTCTGCTTTTCTTAATGCCTTTATTTCACTGGTTACAACATCAGAAGATGTTCCAGTTTCTACACTGACCCCAATGTTTAAGTTCTTACCTATCAACAGCTCTTCTTATCCAAAGCTCAATGTCGTGAGGGAGTCTATCAAAGCAAAACTGCTTACAGAGAATATCATACCGTGTGAGTCGTATTCAGACCAGAAGATCTTTCGTAAACCTTGTGAAGTGGGTAGGTTAATGCCTTCTTTCTGGAATATCCTGAAAAAGGCAAGGAAGCAAGGGGTAAGCTTGCATTCTCTATCATCCCATGGAAGGTATATCCTGAATTCTTCATTTGATACAGAGGAGCACGATCACATATTGAATTTCCTTGGTGTGGAACCTGTCAATAGCGAATGGTATGCCAAGTGTATCATGAGTTCCAAGCTTGTTTTGGGAGTGACAGAGGATGACTATTTGGAGCTTCTACTCTTTATTGCTGAGAAATGGAGTTTCTCGTTCTATAGCACTACTATGAAGTATGTGCCTCTCCTGAAATATCTTGCAATTGCCTATGCTCACTTCCTTTATCATTCGTTCTCAAAGAGTTATCTACCAAAGGAGAAGGTTGATTATTTGTGTGGTATTATGCCACTTGTAGATAACTATGGGCATGTGATGAGACGAAGAAAAGGGGTTCTCGTCCCTGCCAATGGAAGCAAATGGGTGGGATTGATGGGTGCAAATCCGTGGAGGGAAGAAGGCTATGTTGAACTAGGAGAAGACTATTTGCGCTCAGGAAATTATGCAGGTTCATTCACCCCAGAAAGTCAGCTAATAACATTTCTCAAAACACATATTGCAGTTTCTGATATACCTGATATATCTCCTCCCAACGCTGAGTTATCTGTTGCAGATACACCACTCACCAAGAAAAATGCATTCTTGCTGTTGGACTGGATTCATAATCTGAATTATAAGGAAAATCTGCCTGCTAAGTTCTTGGCATCCATTCGGACAGGAAGCTGGCTCAAAATTTCCCTCAGTGACAGCCCTGGATACAGGCCACCATCACAGTCTTTTCTATTTGCTTCATCAGATGGAAATCTTCTTCAGGACGAGTCAGTGATGGTTGATATTCCATTGATTGACCAAGAATTTTATGGCAATGGCTTAAATAATTATAAGGAGGAGCTCAAAAAAATTGGAGTAATGTTTGAATATCGTGACATGTGTCAGTTTGCAGGGAAGCACGTAATGTCTCTTGCAACTTCCTCTGCATTGACCAAATCTAATGTGTTTCAAATACTTAATTTCATCAAATTTCTGCGGCTTAAAGTTCTTCCAGCTGATGAGTTCATCCAGACTATCAAGGATGGAAGATGGTTGAAGACTTCCTGTGGTCACAGGTCTCCAGTTGGATCTGTTTTATTTGACCAAGAATGGAAAGCTGCATCACAAATCAGTGACATCCCCTTCATCGACCAAGATCACTACGGCAAGGAAATCCTTCGTTTCAAAATGGAACTCCAATTGCTAGGTGTGGTAGTTGGCTTCAACAAAAATTACCAGCTTGTTACTGATCACTTAAAGTCTCAAGCATGCTCAAATCATCCAACAGCCGAGGCTATTCTTTTGATATTTGAATGCATGCGTGATTGTGAGCGCAATTCAAGACCAGCCGATAAACTTATACAGGCACTTAAAGGTAATAAATGCTTGAAGACGAACATGGGCTACAAGTTTCCTAGTGAATGTTTCCTGTTTAATACTGAGTGGGGCTGCCTTCTGAAAGTCTTCCATAATGATTTCCCACTTATTGATGAAGACTTCTATGGGACCACCATCTTTTCTTACAAAAGAGAGTTGGGGCAAGCAGGAGTAGTGGTAGATTTTGAGGCGGCAACCCAGAAATTTTCTCCTGTTTTCAAGAAACGTGCATCCTCATCTTCCATTGGAAGAGAACATGTTCTGTCTTTTCTCGCATCTTACAGACAGATTAATAAGACAAACAACAAGTTTCCTTCAGATTTTGTGTGCAGCATCTACGAGGCAAAATGGCTGCAAACACGCTTTGGTGATCCTAGATCTCCAAGAGAGTGCATTCTTTTTGGCCCGGAGTGGGAACCTGTAAGCTCAATTACTCTGCTTCCTTTCATTGATGACAGTGATAATTCCTACGGCAAGGGCATTCATGAATACAGAAAAGAGCTGAATAGCCTGGGCGTTACCATCAAATATAGAGATGGTGTGAGGTTTGTGGCTGCTGGTATCTGTTTTCCCCAAGATCCCAGCACTATAACTCCAGAAAGTGTGCTCTCTCTGCTGCAGTGCATAAAGATTTTACAGAAATATGATCCTCATTTACCTGACATTTTCCGGAAAAAGGTTTCCCAAAGTTGGTTAAAAACCTATTATGGGTATAGGTCTCCAGACCAAAGTTTGTTGTTTGGCTCTGAGTGGGAGTGGGTCAGTCCTGAAAAGTGTGTTATTTATGACAAGGATGGTCTCTTCAGTTCACAGTTTAATGTTTTAGAGAAACACTATATGCCAGAATTATTCACCTTTTTCTCCAGAGTTATGCAAGTTAAGTCCAATCCTTCTGTTGATGACTACTGCGAACTTTGGAATAACTGGGAAAATTCAAGGGAGCGATTGTCACATTCAGAGTGTTGTGCTTTCTGGGCCCATGTTTCAAATCACTGGAGTAAAAAGACACAGAAAACTCTTGCTGAAAACTTGTCAAAACTGCCAGTTGAATCGGACTCAGATGGAATCATGTTATTTGACAAACATGATGTTTACATCGCAGATGACCTCCAGCTGAAGTATCTTTTCGAACAATCTTCCCCTCATTCAATTTTTGTCTGGTATCCCCAGCCAAGCATCCCTTCCTTGTCCTGGACTAAGCTATTTGAGATCTACAGAAAAATTGGTGTTCGAACTATCTCTGAATCTGTACAGAAAGAGGATATCTCCAAGTTGGAAGCTAGTGAACTCAAGCAAGTGTCTCAGAAGGAATCTTTAATCGGAAGAGGCCTGCTGAGACTCATTCTTGGCTTTCTCGCTGATCCTTCTATTGAAATGGAAGCAGGACAAAGGCAGGAAGTTGTCAAAGGCCTTCTCAATCTTGAGGTCTTTCAGACGGAGGATCCAATTGCAGTAAGCTATAGACTGTCAACGACTTCCGGGGAAACCATGGACATTAATGCAAGACGAATGATGTGCTGGGACCAGGAGAATTTCAAGCTTATCATGGAGAAGATGGAGATGTCAGGTGGACATAAAAGTACAATTGAATATGCTACAATCTTCGCTGAAGTAATATCTGAAGCTGTGTTACAGGGGAATGGAGACCATATATCCGCTCTTGCCAAACTGATCAAGTTAGCATTCCTCCTGGATTTTGACGAGGAAGCAGTTGGGTTCTTGATGAGATCCAAGAATCTCCAAGTTTTCATGGAGGACGAGGAGTTTCTCTCTTCAGCTTTTTCTGTCGAGGGTCGACCAGGTATGTGCCCTATGCCATGA 6471 41.93 MATPEEHIKEIRRTKFSIGGELNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNDYPEGVNPSLELVITSQDITGTGASATLLIFNNEKGFSAKNIESICSVGRSTKKNNRKCGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNEEPCPHSNLGYIVPEWVQWNPTLDDIKQIYGSHAVLPTTTIILPLKPDKIGPVKEQLSSIQPEVLLFLSKIKQFSVKKHNEDPRLNTVNAISISTKDVTEKECSYYMWRQKFPVRQENQVERRLGVEELVITLAFPFGQRLNRGISSPGVYAFLPTEMVTNFPFIIQADFVLASSRETILLDNKWNQGILDCVPSAFLNAFISLVTTSQDVPVSTLTPMFKFLPIYSSPYPKLNDVRELIKAELLKKNIVPWVSLHSLSSHGKYILNSSFDTEEYDHILNFLGVEPVNSEWYAKCIKNHYGKEILRFKMELQLLGVVVGFNKNYQLVTDHLKSQACSNHPTAEAILLIFECMRDCERNSRSAHKLIQALKGNKCLKTNMGYKFPSECFLFNTEWDSLLKVFHNDFPLIDEDFYGTSILSYEKESRQAGIVVDFEAATQKFLAVFKKHASSSPRECILFGPEWEPVSSITVLPFIDDSDKLSMSSGETMAVDARRMMRWDREDSNLFMQKMEISGGHKNKIEYVNREGVVMATPKEHIEEIRRTKFSIGGELNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNEYGEGVNPSLELVITSQDITDTGAPATLLIFNNEKGFSAKNIESICSVGRSTKKSNRKQGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNEEPCSHSNLGYIVPEWVEQNPSLADIKQIYGSHAVLPTTTIILPLKPDKIKPVKQQLSSIQPEVLLFLSKIKHYYMWRQKFPVRQENQVERRLGVEEWVIKLAFPIGQRLNRGMSSPGIYAFLPTEMVTNFPFIIQADFVLASSRETILLDNKWNQGILDCVPSAFLNAFISLVTTSEDVPVSTLTPMFKFLPINSSSYPKLNVVRESIKAKLLTENIIPCESYSDQKIFRKPCEVGRLMPSFWNILKKARKQGVSLHSLSSHGRYILNSSFDTEEHDHILNFLGVEPVNSEWYAKCIMSSKLVLGVTEDDYLELLLFIAEKWSFSFYSTTMKYVPLLKYLAIAYAHFLYHSFSKSYLPKEKVDYLCGIMPLVDNYGHVMRRRKGVLVPANGSKWVGLMGANPWREEGYVELGEDYLRSGNYAGSFTPESQLITFLKTHIAVSDIPDISPPNAELSVADTPLTKKNAFLLLDWIHNLNYKENLPAKFLASIRTGSWLKISLSDSPGYRPPSQSFLFASSDGNLLQDESVMVDIPLIDQEFYGNGLNNYKEELKKIGVMFEYRDMCQFAGKHVMSLATSSALTKSNVFQILNFIKFLRLKVLPADEFIQTIKDGRWLKTSCGHRSPVGSVLFDQEWKAASQISDIPFIDQDHYGKEILRFKMELQLLGVVVGFNKNYQLVTDHLKSQACSNHPTAEAILLIFECMRDCERNSRPADKLIQALKGNKCLKTNMGYKFPSECFLFNTEWGCLLKVFHNDFPLIDEDFYGTTIFSYKRELGQAGVVVDFEAATQKFSPVFKKRASSSSIGREHVLSFLASYRQINKTNNKFPSDFVCSIYEAKWLQTRFGDPRSPRECILFGPEWEPVSSITLLPFIDDSDNSYGKGIHEYRKELNSLGVTIKYRDGVRFVAAGICFPQDPSTITPESVLSLLQCIKILQKYDPHLPDIFRKKVSQSWLKTYYGYRSPDQSLLFGSEWEWVSPEKCVIYDKDGLFSSQFNVLEKHYMPELFTFFSRVMQVKSNPSVDDYCELWNNWENSRERLSHSECCAFWAHVSNHWSKKTQKTLAENLSKLPVESDSDGIMLFDKHDVYIADDLQLKYLFEQSSPHSIFVWYPQPSIPSLSWTKLFEIYRKIGVRTISESVQKEDISKLEASELKQVSQKESLIGRGLLRLILGFLADPSIEMEAGQRQEVVKGLLNLEVFQTEDPIAVSYRLSTTSGETMDINARRMMCWDQENFKLIMEKMEMSGGHKSTIEYATIFAEVISEAVLQGNGDHISALAKLIKLAFLLDFDEEAVGFLMRSKNLQVFMEDEEFLSSAFSVEGRPGMCPMP* 2157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 484105 501880 + Vvi17g56 Vvi17g56 778753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g56 2156 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 706 878 IPR036890 -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 6 446 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 629 672 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 599 628 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 1802 2144 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 1168 1802 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 447 600 - -
Vvi17g56 2156 PANTHER ATP/DNA BINDING PROTEIN-RELATED 683 1168 - -
Vvi17g56 2156 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 28 200 IPR036890 -
Vvi17g56 2156 PANTHER WU:FJ29H11 629 672 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 447 600 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 683 1168 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 1168 1802 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 599 628 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 1802 2144 - -
Vvi17g56 2156 PANTHER WU:FJ29H11 6 446 - -
Vvi17g56 2156 Gene3D - 697 897 IPR036890 -
Vvi17g56 2156 Gene3D - 19 224 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g56 - - - pvu:PHAVU_010G031600g 1598.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g56 . . . . . . . . . . . . . . Sed08g0454 . . Bhi02g00646 Tan09g1740 Cmetu06g1175 . Hepe09g0021 . . Cla06g01769 Cam06g1961 Cec06g2012 Cco06g2018 Clacu06g1919 Cmu06g1860 Cre06g2673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003517 0 3 0 0 0 2 1 4 2 1 2 2 1 1 2 1 2 1 1 2 1 1 1 2 2 2 2 4 1 3 47