Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g562 ATGCAGGAGCCCAAGGACCCCGCGTTTAAGCTCTTTGGCAAAACCATACCCATGCTAGCGGACGGCGATGCTCCGGTCAGCTCAGGTGATGTTGGAGACTCTGGCGCTGCTGTTGCCCGTGAAGATGGTCTTGAAGAAGAAACTGAGAAGGATGCCCTGGGAGGAAAACCTGCTGAGACCAAAGGAGAAGATGGTTCAGAGGAGTCAAGGAATTCAGAAACAGTGGCAGAGAGCAATGAGAACCCTAAAACACCCTCTATTGCTGAAGAAAATGTAACACTAAAAACTTCCAAGGCGGAAAAAGGACAAAGTGATAGTCCTGATTCTCAAGAGAAAACCCTGAAGAAGCCAGACAAAATCCTTCCATGCCCCCGCTGTAATAGCATGGACACAAAGTTCTGTTATTACAACAATTACAACATTAACCAACCCCGTCACTTCTGCAAAAGCTGCCAGAGGTATTGGACTGCTGGGGGTACCATGAGGAATGTTCCAGTGGGAGCTGGCCGTCGAAAGAACAAGAATTCTGCCTCGCATTATCGACATATCACCATCTCTGAAGCACTCCAAACTGAAAATGGTGATGATCACTCTAGTGCATCTTCTATCACCGTTTCAAATTCATCGGAGGAAGGAAGCAAGTATGGGCTACATGAGGCAAAGCGAAATTCCCATGGTGTACCTTCTCGAATTCCATGTATCCCTGGGATTCCCTGGCCTTATCCTTGGAATTCTGCAGTGCCTCCACCTTTCTGTCCTCCAGGTTTTCCTATGCCATTCTATCCTGCAGCCTATTGGAATTGTCATGTTACGGCCCCTTGGAACATTCCTTGGGAAGGGGACATTCTTAAACCAAGCATTGTGGAGGATGAAGAGACCCCAAAACAGAGGAGTTCAGAGAGATGCCTCTGGGTTCCAAAGACCTTGAGAATTGATGATCCTGCTGAAGCTGCAAAGAGTTCCATATGGACAACGCTCGGGATTAAGAATGACAAGAACGAGGAAGGGGATTGGACAATGAACAGGGCCTATGCCCTTTCCCCTCACCTGGCCCCAATTATTATTCCCTGTTCCCATCGAACGGGTATTTTTTGTCATCTCTAA 1104 47.64 MQEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAVAREDGLEEETEKDALGGKPAETKGEDGSEESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQTENGDDHSSASSITVSNSSEEGSKYGLHEAKRNSHGVPSRIPCIPGIPWPYPWNSAVPPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWEGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAEAAKSSIWTTLGIKNDKNEEGDWTMNRAYALSPHLAPIIIPCSHRTGIFCHL* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6845878 6853538 + Vvi17g562 Vvi17g562 779259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 2 191 332 IPR045174 GO:0003700|GO:0006355
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 2 1 191 IPR045174 GO:0003700|GO:0006355
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 1 191 332 - -
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 1 1 191 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 75 100 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 101 119 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 39 74 - -
Vvi17g562 367 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Vvi17g562 367 MobiDBLite consensus disorder prediction 18 121 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 189 223 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 189 213 - -
Vvi17g562 367 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Vvi17g562 367 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g924 Vvi17g562 ECH
Vvi14g1560 Vvi17g562 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14212 PF02701 zf-Dof 1.80E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g562 - - vvi:100257057 395.971