Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g562 ATGCAGGAGCCCAAGGACCCCGCGTTTAAGCTCTTTGGCAAAACCATACCCATGCTAGCGGACGGCGATGCTCCGGTCAGCTCAGGTGATGTTGGAGACTCTGGCGCTGCTGTTGCCCGTGAAGATGGTCTTGAAGAAGAAACTGAGAAGGATGCCCTGGGAGGAAAACCTGCTGAGACCAAAGGAGAAGATGGTTCAGAGGAGTCAAGGAATTCAGAAACAGTGGCAGAGAGCAATGAGAACCCTAAAACACCCTCTATTGCTGAAGAAAATGTAACACTAAAAACTTCCAAGGCGGAAAAAGGACAAAGTGATAGTCCTGATTCTCAAGAGAAAACCCTGAAGAAGCCAGACAAAATCCTTCCATGCCCCCGCTGTAATAGCATGGACACAAAGTTCTGTTATTACAACAATTACAACATTAACCAACCCCGTCACTTCTGCAAAAGCTGCCAGAGGTATTGGACTGCTGGGGGTACCATGAGGAATGTTCCAGTGGGAGCTGGCCGTCGAAAGAACAAGAATTCTGCCTCGCATTATCGACATATCACCATCTCTGAAGCACTCCAAACTGAAAATGGTGATGATCACTCTAGTGCATCTTCTATCACCGTTTCAAATTCATCGGAGGAAGGAAGCAAGTATGGGCTACATGAGGCAAAGCGAAATTCCCATGGTGTACCTTCTCGAATTCCATGTATCCCTGGGATTCCCTGGCCTTATCCTTGGAATTCTGCAGTGCCTCCACCTTTCTGTCCTCCAGGTTTTCCTATGCCATTCTATCCTGCAGCCTATTGGAATTGTCATGTTACGGCCCCTTGGAACATTCCTTGGGAAGGGGACATTCTTAAACCAAGCATTGTGGAGGATGAAGAGACCCCAAAACAGAGGAGTTCAGAGAGATGCCTCTGGGTTCCAAAGACCTTGAGAATTGATGATCCTGCTGAAGCTGCAAAGAGTTCCATATGGACAACGCTCGGGATTAAGAATGACAAGAACGAGGAAGGGGATTGGACAATGAACAGGGCCTATGCCCTTTCCCCTCACCTGGCCCCAATTATTATTCCCTGTTCCCATCGAACGGGTATTTTTTGTCATCTCTAA 1104 47.64 MQEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAVAREDGLEEETEKDALGGKPAETKGEDGSEESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQTENGDDHSSASSITVSNSSEEGSKYGLHEAKRNSHGVPSRIPCIPGIPWPYPWNSAVPPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWEGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAEAAKSSIWTTLGIKNDKNEEGDWTMNRAYALSPHLAPIIIPCSHRTGIFCHL* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6845878 6853538 + Vvi17g562 Vvi17g562 779259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 2 191 332 IPR045174 GO:0003700|GO:0006355
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 2 1 191 IPR045174 GO:0003700|GO:0006355
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 1 191 332 - -
Vvi17g562 367 PANTHER CYCLIC DOF FACTOR 1 1 191 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 75 100 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 101 119 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 39 74 - -
Vvi17g562 367 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Vvi17g562 367 MobiDBLite consensus disorder prediction 18 121 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 189 223 - -
Vvi17g562 367 MobiDBLite consensus disorder prediction 189 213 - -
Vvi17g562 367 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Vvi17g562 367 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g562 - - - vvi:100257057 395.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g924 Vvi17g562 ECH
Vvi14g1560 Vvi17g562 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT1G29160 58.4 3.5e-48 188.3
Vvi2g209 ECH 1 88 C2C2-Dof Transcription Factor Family AT1G64620 76.3 2.1e-39 160.2
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT2G34140 58.0 3.8e-47 184.9
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT2G37590 59.6 4.3e-39 159.1
Vvi13g300 ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.1e-38 156.8
Vvi2g209 ECH 1 89 C2C2-Dof Transcription Factor Family AT4G24060 78.4 6.6e-43 171.8
Vvi17g562 ECH 111 331 C2C2-Dof Transcription Factor Family AT5G62430 50.9 7.5e-59 224.6
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT5G02460 59.9 1.2e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14212 PF02701 zf-Dof 1.80E-32 No_clan Vvi TF