Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g562 | ATGCAGGAGCCCAAGGACCCCGCGTTTAAGCTCTTTGGCAAAACCATACCCATGCTAGCGGACGGCGATGCTCCGGTCAGCTCAGGTGATGTTGGAGACTCTGGCGCTGCTGTTGCCCGTGAAGATGGTCTTGAAGAAGAAACTGAGAAGGATGCCCTGGGAGGAAAACCTGCTGAGACCAAAGGAGAAGATGGTTCAGAGGAGTCAAGGAATTCAGAAACAGTGGCAGAGAGCAATGAGAACCCTAAAACACCCTCTATTGCTGAAGAAAATGTAACACTAAAAACTTCCAAGGCGGAAAAAGGACAAAGTGATAGTCCTGATTCTCAAGAGAAAACCCTGAAGAAGCCAGACAAAATCCTTCCATGCCCCCGCTGTAATAGCATGGACACAAAGTTCTGTTATTACAACAATTACAACATTAACCAACCCCGTCACTTCTGCAAAAGCTGCCAGAGGTATTGGACTGCTGGGGGTACCATGAGGAATGTTCCAGTGGGAGCTGGCCGTCGAAAGAACAAGAATTCTGCCTCGCATTATCGACATATCACCATCTCTGAAGCACTCCAAACTGAAAATGGTGATGATCACTCTAGTGCATCTTCTATCACCGTTTCAAATTCATCGGAGGAAGGAAGCAAGTATGGGCTACATGAGGCAAAGCGAAATTCCCATGGTGTACCTTCTCGAATTCCATGTATCCCTGGGATTCCCTGGCCTTATCCTTGGAATTCTGCAGTGCCTCCACCTTTCTGTCCTCCAGGTTTTCCTATGCCATTCTATCCTGCAGCCTATTGGAATTGTCATGTTACGGCCCCTTGGAACATTCCTTGGGAAGGGGACATTCTTAAACCAAGCATTGTGGAGGATGAAGAGACCCCAAAACAGAGGAGTTCAGAGAGATGCCTCTGGGTTCCAAAGACCTTGAGAATTGATGATCCTGCTGAAGCTGCAAAGAGTTCCATATGGACAACGCTCGGGATTAAGAATGACAAGAACGAGGAAGGGGATTGGACAATGAACAGGGCCTATGCCCTTTCCCCTCACCTGGCCCCAATTATTATTCCCTGTTCCCATCGAACGGGTATTTTTTGTCATCTCTAA | 1104 | 47.64 | MQEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAVAREDGLEEETEKDALGGKPAETKGEDGSEESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQTENGDDHSSASSITVSNSSEEGSKYGLHEAKRNSHGVPSRIPCIPGIPWPYPWNSAVPPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWEGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAEAAKSSIWTTLGIKNDKNEEGDWTMNRAYALSPHLAPIIIPCSHRTGIFCHL* | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6845878 | 6853538 | + | Vvi17g562 | Vvi17g562 | 779259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g562 | 367 | PANTHER | CYCLIC DOF FACTOR 2 | 191 | 332 | IPR045174 | GO:0003700|GO:0006355 | |
Vvi17g562 | 367 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 191 | IPR045174 | GO:0003700|GO:0006355 | |
Vvi17g562 | 367 | PANTHER | CYCLIC DOF FACTOR 1 | 191 | 332 | - | - | |
Vvi17g562 | 367 | PANTHER | CYCLIC DOF FACTOR 1 | 1 | 191 | - | - | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 75 | 100 | - | - | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 101 | 119 | - | - | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 39 | 74 | - | - | |
Vvi17g562 | 367 | Pfam | Dof domain, zinc finger | 118 | 175 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 18 | 121 | - | - | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 189 | 223 | - | - | |
Vvi17g562 | 367 | MobiDBLite | consensus disorder prediction | 189 | 213 | - | - | |
Vvi17g562 | 367 | ProSiteProfiles | Zinc finger Dof-type profile. | 121 | 175 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi17g562 | 367 | ProSitePatterns | Zinc finger Dof-type signature. | 123 | 159 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi1g924 | Vvi17g562 | ECH | |
Vvi14g1560 | Vvi17g562 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14212 | PF02701 | zf-Dof | 1.80E-32 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g562 | - | - | vvi:100257057 | 395.971 |