Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g566 ATGGCCACTGTCACCACCCAAGCTTCCGCCGCCGTCTTCCGGCCATGCGCCTCCAAATCGAGGTTCCTCACTGGGTCCTCCGGTAAACTGGGTCGAGAAGTATCTGTAAAACCCATGACCTCTTCGTCCTTCAAGGTGGAGGCCAAGAAAGGGGAGTGGTTGCCCGGCCTGTCTTCCCCATCTTACCTCGATGGAAGTCTTCCTGGTGACAATGGTTTTGATCCTCTGGGGCTTGCGGAGGACCCCGAGAACTTGAAATGGTACGTGCAGGCTGAGCTTGTGAACAGTAGATGGGCGATGTTAGGGGTTGCCGGAATGCTGCTGCCGGAAGTTTTTACAAAGATAGGGATCATCAATGCCCCCCAGTGGTATGATGCAGGGAAAGCGGAGTACTTCGCATCATCTTCTACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCAGAAGGTGGCAGGACATCAAGAACCCAGGAAGTGTGAACCAGGACCCCATTTTCAAGAACTACAGCTTACCTCCCAATGAGGTGGGTTACCCCGGTGGTATTTTCAACCCCCTGAACTTTGCACCAACTGAGGAGGCCAAGGAAAAGGAACTTGCTAACGGGAGATTAGCAATGTTGGCATTCCTGGGGTTTATTGTTCAACACAACGTGACTGGAAAAGGGCCATTTGACAACCTCTTGCAGCACATCTCAGACCCATGGCACAACACCATCATCCAAACACTGAGGGGCTTCTAA 750 52.0 MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTLRGF* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6886159 6887564 - Vvi17g566 Vvi17g566 779263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g566 249 SUPERFAMILY Chlorophyll a-b binding protein 50 246 - -
Vvi17g566 249 Pfam Chlorophyll A-B binding protein 60 219 IPR022796 -
Vvi17g566 249 Gene3D Chlorophyll a/b binding protein domain 60 239 - -
Vvi17g566 249 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 249 IPR001344 GO:0009765|GO:0016020
Vvi17g566 249 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g60 Vvi17g566 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g566 K08910 - vvi:100232934 506.523