Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g567 ATGAATCTTCATAATTTCCAACACAAAGACACTCAAAACCACGTAGAAACACTATTTGCGCCCCTTCCAACCATCTATATAAACCCCTCCACACCCTGCCCATTTCCCCACAAATCCTCCTCTTCACACTTTCTCTCTTTCTCTCTCTCAAGGAAAATGTCTCTTCTTGGGTTTCTGCTTGTGGGGTTATTCTCTCTGCTCTCATCTGTTCAAGGGGATGCAGGTGGTTGGACTGATGCTCATGCCACTTTCTATGGAGGGGGTGATGCCTCTGGAACAATGGGTGGGGCTTGTGGTTATGGAAACTTATACAGCCAGGGATATGGGACCAACACTGCAGCTTTGAGCACAGCCTTATTCAACAGTGGGTTGAGCTGTGGTGCTTGTTTCGAGATTAGGTGTGCGAATGACCCAAGGTGGTGTCGTTCTGGCTCTATTACGGTCACAGCCACCAACTTCTGCCCTCCAAACAATGCCCTCCCAAACAATGCAGGAGGGTGGTGCAACCCTCCCCAACAACATTTTGACCTCTCTCAGCCTGTCTTTGAAAGGATTGCAGAGTACAGAGCTGGGATTGTTCCAGTCTCCTACAGAAGGGTACCCTGCATCAAGAAAGGAGGCATCAGGTTCACCATGAATGGCCATTCTTACTTCAACTTAGTACTGATATCCAACGTTGGAGGTGCTGGTGATGTCCACAGTGTTTCCATCAAAGGGTCAAAAACAGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAACTGGCAAAGCAACTCCTACCTCAACGGACAGAGCCTCTCCTTCAAGGTGACCTTAAGCGATGGGCGAACCGCTGTCTCAAACAATGTTGTCCCTGCTGGCTGGTCCTTTGGCCAGACCTTTAGTGGGTCACAGTTCACCTAG 903 49.28 MNLHNFQHKDTQNHVETLFAPLPTIYINPSTPCPFPHKSSSSHFLSFSLSRKMSLLGFLLVGLFSLLSSVQGDAGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIRCANDPRWCRSGSITVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFERIAEYRAGIVPVSYRRVPCIKKGGIRFTMNGHSYFNLVLISNVGGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTLSDGRTAVSNNVVPAGWSFGQTFSGSQFT* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6888372 6890086 - Vvi17g567 Vvi17g567 779264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g567 300 SMART dpbb_1 112 197 IPR007112 -
Vvi17g567 300 SUPERFAMILY PHL pollen allergen 204 295 IPR036749 -
Vvi17g567 300 Gene3D - 64 202 IPR036908 -
Vvi17g567 300 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Vvi17g567 300 Pfam Lytic transglycolase 112 197 IPR009009 -
Vvi17g567 300 PRINTS Expansin signature 107 121 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 134 145 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 146 156 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 165 182 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 182 195 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Vvi17g567 300 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Vvi17g567 300 PANTHER EXPANSIN 57 299 - -
Vvi17g567 300 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 95 207 IPR007112 -
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 76 91 IPR007118 GO:0005576
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 116 134 IPR007118 GO:0005576
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vvi17g567 300 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Vvi17g567 300 Gene3D - 207 299 IPR036749 -
Vvi17g567 300 PANTHER EXPANSIN-A15 57 299 IPR002963 GO:0009664
Vvi17g567 300 SUPERFAMILY Barwin-like endoglucanases 63 225 IPR036908 -
Vvi17g567 300 Pfam Expansin C-terminal domain 208 285 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g926 Vvi17g567 ECH
Vvi14g1564 Vvi17g567 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g567 - K20628 vvi:100258655 497.278