Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g568 ATGGAGGCTTCTTTCAGGCCCAAAAGCAAAGGGGTTCACGAGTCATGTGCCTCCTTTGGGTCTTTAAAGTTCAAAGAATCTCTTGTTCTGGGTAGCAGATTTACGGGAAAGCATGTGTTTATCACGGATCAGAAATGTTTAAGAGATTGGAGTTTTAAAGCCCCATACAAATTCTCTGTTCATGCACAAGCATCAATCTGCGTGAGCCGAGCTCTGAGATGGTGGGAGAAGACTCTTAAAACCAACATGGTAGAGATCCATTCTGCACAAGAGCTCGTCGATTCCTTACTGAATGCAGGGGATAGATTGGTGGTTGTTGACTTCTATTCGCCTCGTTGTGGAGGCTGCAAAGCTCTGCATCCCAAGATCTGTCAGCTGGCTGAATTGAACCCAAATGCAATTTTTCTCAAAGTTGATTATGAAGAACTCAAAACTATGTGTCACGCTCTCCACATCCATGTCCTACCATTCTTTAGGTTCTACAGAGGTGCAGAGGGCAGGGTTTGCAGCTTTAGCTGCACCAATGCAACTATCAAGAAATTCAAGGATGCATTGGCAAAGCACGGCGCCAATCGATGTAGTCTCGGCCCTGCAAAAGGCCTAGATGAATCTGAGCTGCTGAAGTTGGCAGCAGTTGGTGAGATACCTCTGAATTTACCATTACCATCTTCCAAGGGTGAAGTAATGGAGGATTCGGCCCTGAAAGGCGCTCATATGTCTGGTTTCTGGGGCAAAGCAGGTAGCAATATGGAACTTGAAGAAGAGAGTGCGATATTGAAGGTCTGA 786 45.8 MEASFRPKSKGVHESCASFGSLKFKESLVLGSRFTGKHVFITDQKCLRDWSFKAPYKFSVHAQASICVSRALRWWEKTLKTNMVEIHSAQELVDSLLNAGDRLVVVDFYSPRCGGCKALHPKICQLAELNPNAIFLKVDYEELKTMCHALHIHVLPFFRFYRGAEGRVCSFSCTNATIKKFKDALAKHGANRCSLGPAKGLDESELLKLAAVGEIPLNLPLPSSKGEVMEDSALKGAHMSGFWGKAGSNMELEEESAILKV* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6914851 6916706 - Vvi17g568 Vvi17g568 779265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g568 261 Pfam Thioredoxin 93 167 IPR013766 -
Vvi17g568 261 ProSiteProfiles Thioredoxin domain profile. 72 190 IPR013766 -
Vvi17g568 261 PANTHER THIOREDOXIN-LIKE 1-2, CHLOROPLASTIC 4 250 - -
Vvi17g568 261 CDD TRX_family 99 186 - -
Vvi17g568 261 PANTHER THIOREDOXIN, MITOCHONDRIAL 4 250 - -
Vvi17g568 261 SUPERFAMILY Thioredoxin-like 74 190 IPR036249 -
Vvi17g568 261 Gene3D Glutaredoxin 74 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g568 - - - vvi:100263807 534.258
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007323 0 2 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 4 2 1 37