Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g570 ATGGATTATGCCTTGAGGGTTTTTGGAAAAATTGAAAACCCAGATGGGTTTCTTTGGAACACCATGATTAGGGGTTTAGGGAGGACAAGGCAACCGGAAAAGGCTTTTGAATTCTACAAGAGAATGCAGGTGAAAGGAGAGGTGTTGGACAATTTCACATACTCTTTCTTGGTGAAGGTTTGTGGGCAGTTGGGATCAGATCTGTTGGGGAAGCAGATCCACTGTAATGTACTGAAGCATGGACTTGAAGAACATGTCTTTGTGAGGAACACTCTCGTTCACATGTACGGCATGTTTAAAGACATCGAAGCTGCAACCCACTTGTTTGAAGAAATGCCCAAATCATACTTAGTAGCTTGGAACACTATCATTGACTGCAATGTCTATTGTGGACGCTACAAAGAAGCTATTGAGCTGTTCTTTCGAATGCTGCAAAGTGGCCTCAAACCTGATGACGCCACGTTTGTTGTGACCCTTTCAGCCTGTGCTGCGTTGGGTGAACTGGATATTGGGAGGCGGGTCCATTCTTGTATTGATCACACTGGCCTTGGCAATGTTGTTTCTGTCTCTAATTCACTGATTGACATGTATGCAAAGTGTGGAGTAGTTGAAGCAGCATACGAGATATTTAATAAGATGAAGGGGAGGAACATAGTGTCATGGAATACGATGATTCTTGGGTTGGCAATGCATGGCCATGGGGATGAGGCGTTGGAACTCTTCTCAAAAATGTTGGAAGAAAAGCTTGCAACACCTAATGAAGTTACTTTCTTGGGAGTTCTATGTGCCTGTAGCCACGGAGGAATGGTTGAAGAAGGAAGAAGATATTTTGATATTATGAGGAGAGACTACAACATCCAACCCACAATAAAGCACTATGGAAGCATGGTGGATATTCTGGGCCGAGCTGGGCTTGTGGAGGAGGCTTACCGATTGATAAAGAGCATGCCCATAGAGAGCAATTCCATTGTATGGAGGACATTGTTGGCTGCGTGTCGGGTGCATGGAAATCTTGAACTTGCAGAGCAAGTGAGACAGCAACTTTTGGAGTTAGAACCAGATCACAGCAGTGATTACGTCCTTCTCGCAAACATGTATGCAAGCGCAGGGCAATGGAACAAAGTGGTGAGAGTGAGAAAATCAATGCATATCAGGGGAGTTCAGAAACCAAAGCCTGGTAATAGCTACATTGGCTTTCAACCTAGTATGAGGTTAGAGATGGAGTCAACTGAAGCTTCCTGTGTCCATTGA 1251 44.36 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYIGFQPSMRLEMESTEASCVH* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6971151 6972402 - Vvi17g570 Vvi17g570 779267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g570 416 Pfam PPR repeat 293 316 IPR002885 -
Vvi17g570 416 Pfam PPR repeat 90 115 IPR002885 -
Vvi17g570 416 Pfam PPR repeat family 216 264 IPR002885 -
Vvi17g570 416 Pfam PPR repeat family 118 163 IPR002885 -
Vvi17g570 416 Pfam PPR repeat family 14 61 IPR002885 -
Vvi17g570 416 SUPERFAMILY TPR-like 99 375 IPR011990 GO:0005515
Vvi17g570 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vvi17g570 416 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 401 - -
Vvi17g570 416 Pfam E motif 335 397 IPR046848 -
Vvi17g570 416 Gene3D Tetratricopeptide repeat domain 172 249 IPR011990 GO:0005515
Vvi17g570 416 Gene3D Tetratricopeptide repeat domain 250 400 IPR011990 GO:0005515
Vvi17g570 416 Gene3D Tetratricopeptide repeat domain 1 69 IPR011990 GO:0005515
Vvi17g570 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 401 - -
Vvi17g570 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi17g570 416 TIGRFAM PPR: pentatricopeptide repeat domain 219 250 IPR002885 -
Vvi17g570 416 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Vvi17g570 416 TIGRFAM PPR: pentatricopeptide repeat domain 191 219 IPR002885 -
Vvi17g570 416 TIGRFAM PPR: pentatricopeptide repeat domain 18 50 IPR002885 -
Vvi17g570 416 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Vvi17g570 416 Gene3D Tetratricopeptide repeat domain 72 171 IPR011990 GO:0005515
Vvi17g570 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g570 - - - vvi:104882308 848.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1569 Vvi17g570 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g570 . . . . . . . . . . Cma10g00200 . Car10g00191 . . . . . . . . . . . Cla06g01583 . . . . . . Cone2ag0836 . . . . . . . . . . . . . . . . Cmo10g00218 . . . . . . . . . . . . . . . . . . . . . Lsi06g01455 Csa01g00245 Chy02g02488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013538 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 0 1 1 2 1 1 1 1 1 26