Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g575 ATGAGGTTGAGAAGAAACACAGATGATGAACAATTGAGGCTGTCGGATCCGGAACATCACACTGTTTCTCGACCCTTGGATAGGGAATGTGAGCAGAATCCAATGAGATTGATGGGGATCTTGGTCGTTTGCTTGATGGTTGTTTCAGTTCTGTTTTCAGTGTCTGTGGTCCTTAGAGACCCACCATCTGATGGAGTTTGGGCTAGTGAAGAAACTAAGTTTCTTCAAGTAAATCCTAGGAAAGATGCAGAAGATAATCTCTCATGGTCAGCCGAGGAACCTAAAGATAAACTGCTTGGCGGCCTTCTTGATGCTGGATTCAATGAAAGATCTTGTCTCAGCAGGTACCAATCAGCCTTATATCGCAAAGAACTACTGCATAAACCTTCTTCTTACCTCCTCTCTAAGTTACGGAGTTATGAAGCTCTTCATAAACGATGTGGACCCTATACAGAATCCTACAACCGTACCTTGAAACAACTCCAGTTGGGCCAACATATGGAGCAATCAGATTGCAACTATTTGGTATGGATATCATTCAGTGGCTTAGGCAACAGGATACTAACTCTAGCTTCGGCATTTCTTTATGCTATCCTCACAAACAGGGTCCTACTTGTTGATCCTGGAGCTGACATGCCTGATCTCTTCTGTGAACCTTTTCCCGAGGTTTCCTGGTTACTCCCCTTGGACTTTCCCCTTAAAAATGAGTTTAACAGCTTTGATCAGAAATCCCCATTTTGTTATGGGAAAATGCTCAAGAATAAGACTTTGACAGATTCTAGTTGGTCGATCCTGCCACCTTATGTGTATCTCCATCTAGTCCATGATTATGATGATCACGATAAGATGTTCTTCTGCAATCAAGATCAATCTTTTCTCCGAAAAATCCCTTGTTTAATTATCAAAACTGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCTTCATTTGAGCAAGAACTCATCTTTGACACTGGGATTGGTCCATTCCAACATGTATTAGATCAGATCATAGCTTGTACCATGACAGAGAATTTGCTGCCAGAAATCAACATGAGGGAACCTGTCGTTAGTTCATATGGACATAAGAAGTCTAAAGCTGTACTCATGACATCTTTGAGCGCTGGATACTTTGAGAAAGTAAGGAACATGTATTGGGAACACCCAACTGTGACAGGGGAAGTGATAGGCGTTTATCAACCAAGTCATGAAGAATATCAACAAACTGAGAAGCAGAATCACAACAGGAAGGCATGGGCAGAAATGTATCTACTGAGCTTGACTGATGTGTTGGTCACTAGTTCATGGTCAACTTTTGGGTATGTGGCTCAGGGCCTTGGAGGATTAAAACCTTGGATTCTCTACAAGCCTGAAAATCAGACTGCCCCAGATCCACCTTGTCGCCGAGCCATGTCAATGGAGCCTTGTTTCCACGCCCCTCCCTTCTATGACTGCAAGGCAAAGAAGGGGGTTGACACAGGCGCACTTGTTCCTCACGTGAGGCATTGTGAGGACATGAGCTGGGGTCTCAAACTGGTTGATGACAGCCAGGAACATGGGGTTGTGAGGACATGA 1575 43.56 MRLRRNTDDEQLRLSDPEHHTVSRPLDRECEQNPMRLMGILVVCLMVVSVLFSVSVVLRDPPSDGVWASEETKFLQVNPRKDAEDNLSWSAEEPKDKLLGGLLDAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYNRTLKQLQLGQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDLFCEPFPEVSWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVHDYDDHDKMFFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQELIFDTGIGPFQHVLDQIIACTMTENLLPEINMREPVVSSYGHKKSKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEEYQQTEKQNHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGALVPHVRHCEDMSWGLKLVDDSQEHGVVRT* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7027584 7031512 - Vvi17g575 Vvi17g575 779272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g575 524 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g575 524 Pfam Xyloglucan fucosyltransferase 88 321 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi17g575 524 Pfam Xyloglucan fucosyltransferase 322 486 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi17g575 524 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 322 516 - -
Vvi17g575 524 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 2 321 - -
Vvi17g575 524 Gene3D - 169 222 - -
Vvi17g575 524 PANTHER FUCOSYLTRANSFERASE 2-RELATED 2 321 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi17g575 524 PANTHER FUCOSYLTRANSFERASE 2-RELATED 322 516 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g575 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - vvi:100262032 1021.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g967 Vvi17g575 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29